Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptococcus_20neoformans_20var._20grubii_20[genbank_20GCA_5F0022200 45.1_202017-07-17] 898 sequences; 18,619,184 total letters Query= AAMG01000304.1 Length=683 Score E Sequences producing significant alignments: (Bits) Value seq30 524 3e-146 seq612 158 5e-36 >seq30 Length=5756 Score = 524 bits (580), Expect = 3e-146 Identities = 529/681 (78%), Gaps = 39/681 (6%) Strand=Plus/Minus Query 34 TTCGACGAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAG 93 ||| |||||||| ||| |||||| || ||| | ||||||| |||||| | | ||||||| Sbjct 709 TTCTACGAGTCGCGTTACTTGGGAGTGTAGCGCAAAATGGGTGGTAAACTCCATCTAAAG 650 Query 94 CTAAATATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACT 153 ||||||||||| |||||||||||| ||||||| |||| ||||||||||||||||| Sbjct 649 CTAAATATTGGTGGAAGACCGATAGCGAACAAGTACCGTGAGGGAAAGATGAAAAGCACT 590 Query 154 TTGGAAAGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCGCTTGCAACCAGACT 213 ||||||||||||||||| || |||||||||||||||||||||| || ||| | ||| | Sbjct 589 TTGGAAAGAGAGTTAAACAGTACGTGAAATTGTTGAAAGGGAAACGATTGAAGTCAGTCG 530 Query 214 TGCCCGCAGTTGCTCAACCGGCCCCTCGGCCGGTGCACTCTTCTGCGGTCAGGCCAGCAT 273 || | | | ||| || | || || |||| | || || | | || || ||| Sbjct 529 TGTCTATTGG-GTTCAGCCAGT---TCTGCTGGTGTATTCC-CTTTAGACGGGTCAACAT 475 Query 274 CAGCTCGGG-CGGTCGGATAAAGGCCCCGGGAATGTGGCCCCCTTCGGGGGGTGTTATAG 332 ||| || | |||| |||||| ||| |||||||| || | |||||| | ||||||||| Sbjct 474 CAGTTCTGATCGGT-GGATAAGGGCTGGGGGAATGTAGCACTCTTCGGAGTGTGTTATAG 416 Query 333 CCC-------------------GGG---GTGGAATGCGGCCCGCCTGGA---CTGAGGTC 367 || ||| | ||||||| || ||||| | | | ||| Sbjct 415 CCTCCTGTCGCATACACTGGTTGGGACTGAGGAATGCAGCTCGCCTTTATGGCCGGGGTT 356 Query 368 CGCGCTC---CG-GCT-AGGATGCTGGCGTAATGGTTGTAAGCGGCCCGTCTTGGAACAC 422 ||| | | || ||| |||||| || | ||||| | ||| || ||||||||| ||||| Sbjct 355 CGCCCACGTTCGAGCTTAGGATGTTGACAAAATGGCTTTAAACGACCCGTCTTGAAACAC 296 Query 423 GGACCAAGGAGTCTAACATCTATGCGAGTGTTTGGGTGTCAAACCCGTGCGCGTAATGAA 482 ||||||||||||||||||| | |||||||||||| ||||||||| || |||||||||||| Sbjct 295 GGACCAAGGAGTCTAACATATCTGCGAGTGTTTGAGTGTCAAACTCGAGCGCGTAATGAA 236 Query 483 AGTGAACGGAGGTGGGAACCCGTGAGGGTGCACCATCGACCGATCCTGATGTCTTCGGAT 542 |||||| | ||| |||| || | || ||||| ||||||||||| ||| | | ||| Sbjct 235 AGTGAATGTAGGAGGGATCCGC--AAGGAGCACCTTCGACCGATCCGGATCTTCTGTGAT 178 Query 543 GGATTTGAGTAAGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGG 602 ||||||||||||||||||| || |||||||||||||||||||||||||||||||||||| Sbjct 177 GGATTTGAGTAAGAGCATATATGCTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGG 118 Query 603 GTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGT 662 | |||||||| ||||||||||||||||||||| |||| ||||| |||||||||||||||| Sbjct 117 GCGAAGCCAGGGGAAACTCTGGTGGAGGCTCGTAGCGATTCTGACGTGCAAATCGATCGT 58 Query 663 CAAATTTGGGTATAGGGGCGA 683 | ||||||||||||||||||| Sbjct 57 CGAATTTGGGTATAGGGGCGA 37 >seq612 Length=68466 Score = 158 bits (174), Expect = 5e-36 Identities = 105/117 (90%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 567 TGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTG 626 |||||||||||||||||||| |||||||||||||||| |||||||| |||||||||| || Sbjct 5901 TGGGACCCGAAAGATGGTGAGCTATGCCTGAATAGGGCGAAGCCAGGGGAAACTCTGATG 5960 Query 627 GAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683 ||||| | | | ||||| ||||||||||||||||| ||||||||||||||||||| Sbjct 5961 TAGGCTGGTGGTGATTCTGACGTGCAAATCGATCGTCGAATTTGGGTATAGGGGCGA 6017 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2079980737900