Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cryptococcus_20neoformans_20var._20grubii_20[genbank_20GCA_5F0022200
45.1_202017-07-17] 898 sequences; 18,619,184 total letters
Query= AAMG01000304.1
Length=683
Score E
Sequences producing significant alignments: (Bits) Value
seq30 524 3e-146
seq612 158 5e-36
>seq30
Length=5756
Score = 524 bits (580), Expect = 3e-146
Identities = 529/681 (78%), Gaps = 39/681 (6%)
Strand=Plus/Minus
Query 34 TTCGACGAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAG 93
||| |||||||| ||| |||||| || ||| | ||||||| |||||| | | |||||||
Sbjct 709 TTCTACGAGTCGCGTTACTTGGGAGTGTAGCGCAAAATGGGTGGTAAACTCCATCTAAAG 650
Query 94 CTAAATATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACT 153
||||||||||| |||||||||||| ||||||| |||| |||||||||||||||||
Sbjct 649 CTAAATATTGGTGGAAGACCGATAGCGAACAAGTACCGTGAGGGAAAGATGAAAAGCACT 590
Query 154 TTGGAAAGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCGCTTGCAACCAGACT 213
||||||||||||||||| || |||||||||||||||||||||| || ||| | ||| |
Sbjct 589 TTGGAAAGAGAGTTAAACAGTACGTGAAATTGTTGAAAGGGAAACGATTGAAGTCAGTCG 530
Query 214 TGCCCGCAGTTGCTCAACCGGCCCCTCGGCCGGTGCACTCTTCTGCGGTCAGGCCAGCAT 273
|| | | | ||| || | || || |||| | || || | | || || |||
Sbjct 529 TGTCTATTGG-GTTCAGCCAGT---TCTGCTGGTGTATTCC-CTTTAGACGGGTCAACAT 475
Query 274 CAGCTCGGG-CGGTCGGATAAAGGCCCCGGGAATGTGGCCCCCTTCGGGGGGTGTTATAG 332
||| || | |||| |||||| ||| |||||||| || | |||||| | |||||||||
Sbjct 474 CAGTTCTGATCGGT-GGATAAGGGCTGGGGGAATGTAGCACTCTTCGGAGTGTGTTATAG 416
Query 333 CCC-------------------GGG---GTGGAATGCGGCCCGCCTGGA---CTGAGGTC 367
|| ||| | ||||||| || ||||| | | | |||
Sbjct 415 CCTCCTGTCGCATACACTGGTTGGGACTGAGGAATGCAGCTCGCCTTTATGGCCGGGGTT 356
Query 368 CGCGCTC---CG-GCT-AGGATGCTGGCGTAATGGTTGTAAGCGGCCCGTCTTGGAACAC 422
||| | | || ||| |||||| || | ||||| | ||| || ||||||||| |||||
Sbjct 355 CGCCCACGTTCGAGCTTAGGATGTTGACAAAATGGCTTTAAACGACCCGTCTTGAAACAC 296
Query 423 GGACCAAGGAGTCTAACATCTATGCGAGTGTTTGGGTGTCAAACCCGTGCGCGTAATGAA 482
||||||||||||||||||| | |||||||||||| ||||||||| || ||||||||||||
Sbjct 295 GGACCAAGGAGTCTAACATATCTGCGAGTGTTTGAGTGTCAAACTCGAGCGCGTAATGAA 236
Query 483 AGTGAACGGAGGTGGGAACCCGTGAGGGTGCACCATCGACCGATCCTGATGTCTTCGGAT 542
|||||| | ||| |||| || | || ||||| ||||||||||| ||| | | |||
Sbjct 235 AGTGAATGTAGGAGGGATCCGC--AAGGAGCACCTTCGACCGATCCGGATCTTCTGTGAT 178
Query 543 GGATTTGAGTAAGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGG 602
||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||
Sbjct 177 GGATTTGAGTAAGAGCATATATGCTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGG 118
Query 603 GTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGT 662
| |||||||| ||||||||||||||||||||| |||| ||||| ||||||||||||||||
Sbjct 117 GCGAAGCCAGGGGAAACTCTGGTGGAGGCTCGTAGCGATTCTGACGTGCAAATCGATCGT 58
Query 663 CAAATTTGGGTATAGGGGCGA 683
| |||||||||||||||||||
Sbjct 57 CGAATTTGGGTATAGGGGCGA 37
>seq612
Length=68466
Score = 158 bits (174), Expect = 5e-36
Identities = 105/117 (90%), Gaps = 0/117 (0%)
Strand=Plus/Plus
Query 567 TGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTG 626
|||||||||||||||||||| |||||||||||||||| |||||||| |||||||||| ||
Sbjct 5901 TGGGACCCGAAAGATGGTGAGCTATGCCTGAATAGGGCGAAGCCAGGGGAAACTCTGATG 5960
Query 627 GAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683
||||| | | | ||||| ||||||||||||||||| |||||||||||||||||||
Sbjct 5961 TAGGCTGGTGGTGATTCTGACGTGCAAATCGATCGTCGAATTTGGGTATAGGGGCGA 6017
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 2079980737900
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |