Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptococcus_20neoformans_20var._20grubii_20[genbank_20GCA_5F0022200 45.1_202017-07-17] 898 sequences; 18,619,184 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq479 259 4e-64 seq1 89.7 4e-13 >seq479 Length=110724 Score = 259 bits (286), Expect = 4e-64 Identities = 507/741 (68%), Gaps = 14/741 (2%) Strand=Plus/Plus Query 66002 GGAAGGGCAAGAGATGCGAGGTTGCAGACAGCTATCTCGTCAGGAGCGGTATACTCGACA 66061 ||||| |||||||| || || || |||||||| | || ||||||| | |||||| | Sbjct 14183 GGAAGAGCAAGAGAAGCAAGATTACAGACAGCAACTTCATCAGGAGAAGAATACTCCATG 14242 Query 66062 ATTTCGGTGCACAGATTACTGCAGCGTATGGTGCCCAAATTCTGTTGATTACTCTTGCGA 66121 ||||| || || || |||||| | ||||| || | | || ||| || |||| Sbjct 14243 ATTTCAGTACAGAGGTTACTGGATTTGATGGTACCAAGGTGCTTTTGGTTGGACTTGGAG 14302 Query 66122 TTGCATGCATCCTTGTACATCATGTACGGAGTGCCGGTCTCAACTTGGGACTCAATGATG 66181 ||| ||||||||||| ||||| || || ||||| ||| | ||| | |||| Sbjct 14303 TTGGCAGCATCCTTGTAGCAGATGTAAGGGACACCAGTCTCGGTTTGAGCCTCGAGGATG 14362 Query 66182 GCGTGCCAAAGAGCGCGTGCCTTCACCGTACGTACCG--CCCTACCTTTGCGTTCGTAAT 66239 ||| |||||| | || || | || | || |||| || | | |||||| Sbjct 14363 GCGAACCAAAGCTTCTGGGCTTTGATAGTT--TTCCTTCCCCTGCCCTGCCTCTCGTAAC 14420 Query 66240 GTTCGTAGAGGTGTTCGAAGGATTCACCCCATACTTCGGACAGACATGGACACTTGTGTG 66299 || || || | ||| || |||||| | || |||| || | || |||| | | Sbjct 14421 TCTCATAAAGCTTTTCAAATTCTTCACCGTAAACGTCGGCAAGTCCAGGGCACTCGGCGG 14480 Query 66300 GACACATCAGCGACCAATCACCATCCTGTTCTACACGACGCATAAATAGATCAGGTATCC 66359 ||||||| || | |||||| ||||| ||| ||||| ||| || ||||| | |||| Sbjct 14481 GACACATAAGAGTCCAATCCCCATCGGATTCGACACGCTTCATGAAAAGATCGGAGATCC 14540 Query 66360 AGAGGGCGTAGAAGAGATCGCGTGCTCGTTGCTCCTCAATGCCGTGATTTTTGCGCAAGT 66419 ||||||||||||| ||||| || |||||| |||||| | || || || || | |||| Sbjct 14541 AGAGGGCGTAGAAAAGATCACGAGCTCGTACCTCCTCCTTACCATGGTTCTTCCTTAAGT 14600 Query 66420 CGAGGAACTCAAAGATGTCGGCATGCCATGGTTCCAGGTAGATGGCGAACGAGCCCATAC 66479 | | ||| ||||| | || || ||||| || || || ||||||||||| | || || Sbjct 14601 CAATGAAGTCAAATACATCAGCGTGCCAAGGCTCAAGATAGATGGCGAAGGCACCAGGAC 14660 Query 66480 GTTTGCCGCCACCTTGGTCGACGTAGCGAGC---GACATTGTTGAAGACACGCAACATCG 66536 | ||| |||||||| || ||||| ||||| | | | || ||| | || | ||| | Sbjct 14661 GCTTGTTACCACCTTGATCAACGTATCGAGCTGTGGCGTCGT--AAG-CTCGGAGCATAG 14717 Query 66537 GTACGAGCCCGTTAGATTTGCCATTGGTGCCGTCGATGGGGGATCCTCGTGCCCGTATAT 66596 | | || ||||| || | |||||||| ||| | ||| ||| || || || |||| Sbjct 14718 GAATGATGCCGTTGGAGTAACCATTGGTACCGGCAATGTAGGAGCCCTTCGCACGGATAT 14777 Query 66597 CGTGAACATTCAGACCAATACCACCGGCCGTCTTCGAGATGGCAGCACA-ATC-GGCCAC 66654 ||||| | ||||||||||||||||| ||||| ||||| |||||| || | | Sbjct 14778 TGTGAATGTGAAGACCAATACCACCGGCAGTCTTGGAGATCTGAGCACAGGTCTTGAGAG 14837 Query 66655 TGTCCGGAATATGCCGTCAATGGAGTCACCCTTGATGGTCAGGAGGTAGCATGAACTAAG 66714 | || | | || || |||||||||||| |||| |||| || |||| ||||||| | Sbjct 14838 TATC--GTAGATACCATCAATGGAGTCATCCTTCATGGCCACGAGGAAGCATGATGACAT 14895 Query 66715 TTGGGGTTTGGGTGTGGCGGC 66735 ||||||| ||| || |||| Sbjct 14896 TTGGGGTCGGGGAGTACCGGC 14916 >seq1 Length=728537 Score = 89.7 bits (98), Expect = 4e-13 Identities = 124/174 (71%), Gaps = 0/174 (0%) Strand=Plus/Minus Query 61738 GACGCTTTGCCCGTCTCACTCATCGGCATGAATTGTGGACTAATGTCGCAGTATATTGAA 61797 |||||| | |||||||| || ||||| ||||| || |||| || || ||||| Sbjct 440675 GACGCTCTCCCCGTCTCTCTTATCGGTATGAACGCCAAGCTCATGTGCCAATACATTGAG 440616 Query 61798 TTTGTTGCCGACCGTCTGTTGGTCGATTTGGGTATGAAGCGGATCTATAATACGAAAAAC 61857 ||||||||||||||||| | || | |||||| | || ||| | || | ||| Sbjct 440615 TTTGTTGCCGACCGTCTTCTTGTTGCTTTGGGCAACGAGAAGATTTGGAACTCTGCCAAC 440556 Query 61858 CCATTTGATTTCATGGACATGATTTCGCTGGATGGCAAGACGAATTTTTTCGAG 61911 || ||||| || ||||| ||||| || || | |||||| | || ||||||||| Sbjct 440555 CCCTTTGACTTTATGGAGATGATCTCTCTCCAAGGCAAGGCCAACTTTTTCGAG 440502 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397563648866720