Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cryptococcus_20neoformans_20var._20grubii_20[genbank_20GCA_5F0022200
45.1_202017-07-17] 898 sequences; 18,619,184 total letters
Query= NC_010671.1
Length=124279
Score E
Sequences producing significant alignments: (Bits) Value
seq479 259 4e-64
seq1 89.7 4e-13
>seq479
Length=110724
Score = 259 bits (286), Expect = 4e-64
Identities = 507/741 (68%), Gaps = 14/741 (2%)
Strand=Plus/Plus
Query 66002 GGAAGGGCAAGAGATGCGAGGTTGCAGACAGCTATCTCGTCAGGAGCGGTATACTCGACA 66061
||||| |||||||| || || || |||||||| | || ||||||| | |||||| |
Sbjct 14183 GGAAGAGCAAGAGAAGCAAGATTACAGACAGCAACTTCATCAGGAGAAGAATACTCCATG 14242
Query 66062 ATTTCGGTGCACAGATTACTGCAGCGTATGGTGCCCAAATTCTGTTGATTACTCTTGCGA 66121
||||| || || || |||||| | ||||| || | | || ||| || ||||
Sbjct 14243 ATTTCAGTACAGAGGTTACTGGATTTGATGGTACCAAGGTGCTTTTGGTTGGACTTGGAG 14302
Query 66122 TTGCATGCATCCTTGTACATCATGTACGGAGTGCCGGTCTCAACTTGGGACTCAATGATG 66181
||| ||||||||||| ||||| || || ||||| ||| | ||| | ||||
Sbjct 14303 TTGGCAGCATCCTTGTAGCAGATGTAAGGGACACCAGTCTCGGTTTGAGCCTCGAGGATG 14362
Query 66182 GCGTGCCAAAGAGCGCGTGCCTTCACCGTACGTACCG--CCCTACCTTTGCGTTCGTAAT 66239
||| |||||| | || || | || | || |||| || | | ||||||
Sbjct 14363 GCGAACCAAAGCTTCTGGGCTTTGATAGTT--TTCCTTCCCCTGCCCTGCCTCTCGTAAC 14420
Query 66240 GTTCGTAGAGGTGTTCGAAGGATTCACCCCATACTTCGGACAGACATGGACACTTGTGTG 66299
|| || || | ||| || |||||| | || |||| || | || |||| | |
Sbjct 14421 TCTCATAAAGCTTTTCAAATTCTTCACCGTAAACGTCGGCAAGTCCAGGGCACTCGGCGG 14480
Query 66300 GACACATCAGCGACCAATCACCATCCTGTTCTACACGACGCATAAATAGATCAGGTATCC 66359
||||||| || | |||||| ||||| ||| ||||| ||| || ||||| | ||||
Sbjct 14481 GACACATAAGAGTCCAATCCCCATCGGATTCGACACGCTTCATGAAAAGATCGGAGATCC 14540
Query 66360 AGAGGGCGTAGAAGAGATCGCGTGCTCGTTGCTCCTCAATGCCGTGATTTTTGCGCAAGT 66419
||||||||||||| ||||| || |||||| |||||| | || || || || | ||||
Sbjct 14541 AGAGGGCGTAGAAAAGATCACGAGCTCGTACCTCCTCCTTACCATGGTTCTTCCTTAAGT 14600
Query 66420 CGAGGAACTCAAAGATGTCGGCATGCCATGGTTCCAGGTAGATGGCGAACGAGCCCATAC 66479
| | ||| ||||| | || || ||||| || || || ||||||||||| | || ||
Sbjct 14601 CAATGAAGTCAAATACATCAGCGTGCCAAGGCTCAAGATAGATGGCGAAGGCACCAGGAC 14660
Query 66480 GTTTGCCGCCACCTTGGTCGACGTAGCGAGC---GACATTGTTGAAGACACGCAACATCG 66536
| ||| |||||||| || ||||| ||||| | | | || ||| | || | ||| |
Sbjct 14661 GCTTGTTACCACCTTGATCAACGTATCGAGCTGTGGCGTCGT--AAG-CTCGGAGCATAG 14717
Query 66537 GTACGAGCCCGTTAGATTTGCCATTGGTGCCGTCGATGGGGGATCCTCGTGCCCGTATAT 66596
| | || ||||| || | |||||||| ||| | ||| ||| || || || ||||
Sbjct 14718 GAATGATGCCGTTGGAGTAACCATTGGTACCGGCAATGTAGGAGCCCTTCGCACGGATAT 14777
Query 66597 CGTGAACATTCAGACCAATACCACCGGCCGTCTTCGAGATGGCAGCACA-ATC-GGCCAC 66654
||||| | ||||||||||||||||| ||||| ||||| |||||| || | |
Sbjct 14778 TGTGAATGTGAAGACCAATACCACCGGCAGTCTTGGAGATCTGAGCACAGGTCTTGAGAG 14837
Query 66655 TGTCCGGAATATGCCGTCAATGGAGTCACCCTTGATGGTCAGGAGGTAGCATGAACTAAG 66714
| || | | || || |||||||||||| |||| |||| || |||| ||||||| |
Sbjct 14838 TATC--GTAGATACCATCAATGGAGTCATCCTTCATGGCCACGAGGAAGCATGATGACAT 14895
Query 66715 TTGGGGTTTGGGTGTGGCGGC 66735
||||||| ||| || ||||
Sbjct 14896 TTGGGGTCGGGGAGTACCGGC 14916
>seq1
Length=728537
Score = 89.7 bits (98), Expect = 4e-13
Identities = 124/174 (71%), Gaps = 0/174 (0%)
Strand=Plus/Minus
Query 61738 GACGCTTTGCCCGTCTCACTCATCGGCATGAATTGTGGACTAATGTCGCAGTATATTGAA 61797
|||||| | |||||||| || ||||| ||||| || |||| || || |||||
Sbjct 440675 GACGCTCTCCCCGTCTCTCTTATCGGTATGAACGCCAAGCTCATGTGCCAATACATTGAG 440616
Query 61798 TTTGTTGCCGACCGTCTGTTGGTCGATTTGGGTATGAAGCGGATCTATAATACGAAAAAC 61857
||||||||||||||||| | || | |||||| | || ||| | || | |||
Sbjct 440615 TTTGTTGCCGACCGTCTTCTTGTTGCTTTGGGCAACGAGAAGATTTGGAACTCTGCCAAC 440556
Query 61858 CCATTTGATTTCATGGACATGATTTCGCTGGATGGCAAGACGAATTTTTTCGAG 61911
|| ||||| || ||||| ||||| || || | |||||| | || |||||||||
Sbjct 440555 CCCTTTGACTTTATGGAGATGATCTCTCTCCAAGGCAAGGCCAACTTTTTCGAG 440502
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 397563648866720
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |