Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptococcus_20neoformans_20var._20grubii_20[genbank_20GCA_5F0022220 15.1_202017-07-20] 494 sequences; 18,606,003 total letters Query= AAMG01000304.1 Length=683 Score E Sequences producing significant alignments: (Bits) Value seq455 524 3e-146 seq480 159 1e-36 >seq455 Length=9042 Score = 524 bits (580), Expect = 3e-146 Identities = 529/681 (78%), Gaps = 39/681 (6%) Strand=Plus/Minus Query 34 TTCGACGAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAG 93 ||| |||||||| ||| |||||| || ||| | ||||||| |||||| | | ||||||| Sbjct 3819 TTCTACGAGTCGCGTTACTTGGGAGTGTAGCGCAAAATGGGTGGTAAACTCCATCTAAAG 3760 Query 94 CTAAATATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACT 153 ||||||||||| |||||||||||| |||||| |||| ||||||||||||||||| Sbjct 3759 CTAAATATTGGTGGAAGACCGATAGCGAACAAGTCCCGTGAGGGAAAGATGAAAAGCACT 3700 Query 154 TTGGAAAGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCGCTTGCAACCAGACT 213 ||||||||||||||||| || |||||||||||||||||||||| || ||| | ||| | Sbjct 3699 TTGGAAAGAGAGTTAAACAGTACGTGAAATTGTTGAAAGGGAAACGATTGAAGTCAGTCG 3640 Query 214 TGCCCGCAGTTGCTCAACCGGCCCCTCGGCCGGTGCACTCTTCTGCGGTCAGGCCAGCAT 273 || | | | ||| || | || || |||| | || || | | || || ||| Sbjct 3639 TGTCTATTGG-GTTCAGCCAGT---TCTGCTGGTGTATTCC-CTTTAGACGGGTCAACAT 3585 Query 274 CAGCTCGGG-CGGTCGGATAAAGGCCCCGGGAATGTGGCCCCCTTCGGGGGGTGTTATAG 332 ||| || | |||| |||||| ||| |||||||| |||| |||||| | ||||||||| Sbjct 3584 CAGTTCTGATCGGT-GGATAAGGGCTGGGGGAATGTAGCCCTCTTCGGAGTGTGTTATAG 3526 Query 333 CCC-------------------GGG---GTGGAATGCGGCCCGCCTGGA---CTGAGGTC 367 || ||| | ||||||| || ||||| | | | ||| Sbjct 3525 CCTCCTGTCGCATACACTGGTTGGGACTGAGGAATGCAGCTCGCCTTTATGGCCGGGGTT 3466 Query 368 CGCGCTC---CG-GCT-AGGATGCTGGCGTAATGGTTGTAAGCGGCCCGTCTTGGAACAC 422 ||| | | || ||| |||||| || | ||||| | ||| || ||||||||| ||||| Sbjct 3465 CGCCCACGTTCGAGCTTAGGATGTTGACAAAATGGCTTTAAACGACCCGTCTTGAAACAC 3406 Query 423 GGACCAAGGAGTCTAACATCTATGCGAGTGTTTGGGTGTCAAACCCGTGCGCGTAATGAA 482 ||||||||||||||||||| | |||||||||||| ||||||||| || |||||||||||| Sbjct 3405 GGACCAAGGAGTCTAACATATCTGCGAGTGTTTGAGTGTCAAACTCGAGCGCGTAATGAA 3346 Query 483 AGTGAACGGAGGTGGGAACCCGTGAGGGTGCACCATCGACCGATCCTGATGTCTTCGGAT 542 |||||| | ||| |||| || | || ||||| ||||||||||| ||| | | ||| Sbjct 3345 AGTGAATGTAGGAGGGATCCGC--AAGGAGCACCTTCGACCGATCCGGATCTTCTGTGAT 3288 Query 543 GGATTTGAGTAAGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGG 602 ||||||||||||||||||| || |||||||||||||||||||||||||||||||||||| Sbjct 3287 GGATTTGAGTAAGAGCATATATGCTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGG 3228 Query 603 GTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGT 662 | |||||||| ||||||||||||||||||||| |||| ||||| |||||||||||||||| Sbjct 3227 GCGAAGCCAGGGGAAACTCTGGTGGAGGCTCGTAGCGATTCTGACGTGCAAATCGATCGT 3168 Query 663 CAAATTTGGGTATAGGGGCGA 683 | ||||||||||||||||||| Sbjct 3167 CGAATTTGGGTATAGGGGCGA 3147 >seq480 Length=233832 Score = 159 bits (176), Expect = 1e-36 Identities = 108/121 (89%), Gaps = 4/121 (3%) Strand=Plus/Minus Query 567 TGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTG 626 |||||||||||||||||||| |||||||||||||||| |||||||| ||||||||||||| Sbjct 229667 TGGGACCCGAAAGATGGTGAGCTATGCCTGAATAGGGCGAAGCCAGGGGAAACTCTGGTG 229608 Query 627 GAGGCTCG----CAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCG 682 |||||||| |||| ||||| |||||||||||||||| |||||||| ||||||||| Sbjct 229607 GAGGCTCGTATATAGCGATTCTGATGTGCAAATCGATCGTCGAATTTGGGCATAGGGGCG 229548 Query 683 A 683 | Sbjct 229547 A 229547 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2079989403700