Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cryptococcus_20neoformans_20var._20grubii_20[genbank_20GCA_5F0022220
25.1_202017-07-20] 568 sequences; 18,568,655 total letters
Query= AAMG01002236.1
Length=287
Score E
Sequences producing significant alignments: (Bits) Value
seq529 125 1e-26
seq528 125 1e-26
seq512 125 1e-26
seq522 86.0 1e-14
>seq529
Length=1803
Score = 125 bits (138), Expect = 1e-26
Identities = 142/185 (77%), Gaps = 4/185 (2%)
Strand=Plus/Minus
Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60
||||||||||||| || | ||| | ||||||||| |||||| ||||| || | |||| |
Sbjct 1778 GTACGAGAGGAACTGCTCA-TTC-GTATAATTGGTATTTGCGTCTGTCCGATCGGGCAAT 1721
Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120
| |||||||||| ||| || ||||||||||||||||||||||||||||||| | | |
Sbjct 1720 GACGCGAAGCTATCATACGCCAGATTATGGCTGAACGCCTCTAAGTCAGAATCTGTACTA 1661
Query 121 GAACGGGGTGATTCT-CTCCTGCACATCGTAGTCGGATACGAATAGGCTTCGGCCCCGAA 179
||| | |||| | ||| |||||| |||| | | ||||||||||||| |||
Sbjct 1660 GAA-ACGACGATTTTGGTCCCGCACATGTTAGTTGTGTTTAAATAGGCTTCGGCTGTGAA 1602
Query 180 CCTTA 184
|| ||
Sbjct 1601 CCATA 1597
>seq528
Length=2093
Score = 125 bits (138), Expect = 1e-26
Identities = 142/185 (77%), Gaps = 4/185 (2%)
Strand=Plus/Minus
Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60
||||||||||||| || | ||| | ||||||||| |||||| ||||| || | |||| |
Sbjct 1948 GTACGAGAGGAACTGCTCA-TTC-GTATAATTGGTATTTGCGTCTGTCCGATCGGGCAAT 1891
Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120
| |||||||||| ||| || ||||||||||||||||||||||||||||||| | | |
Sbjct 1890 GACGCGAAGCTATCATACGCCAGATTATGGCTGAACGCCTCTAAGTCAGAATCTGTACTA 1831
Query 121 GAACGGGGTGATTCT-CTCCTGCACATCGTAGTCGGATACGAATAGGCTTCGGCCCCGAA 179
||| | |||| | ||| |||||| |||| | | ||||||||||||| |||
Sbjct 1830 GAA-ACGACGATTTTGGTCCCGCACATGTTAGTTGTGTTTAAATAGGCTTCGGCTGTGAA 1772
Query 180 CCTTA 184
|| ||
Sbjct 1771 CCATA 1767
>seq512
Length=1160
Score = 125 bits (138), Expect = 1e-26
Identities = 142/185 (77%), Gaps = 4/185 (2%)
Strand=Plus/Minus
Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60
||||||||||||| || | ||| | ||||||||| |||||| ||||| || | |||| |
Sbjct 1015 GTACGAGAGGAACTGCTCA-TTC-GTATAATTGGTATTTGCGTCTGTCCGATCGGGCAAT 958
Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120
| |||||||||| ||| || ||||||||||||||||||||||||||||||| | | |
Sbjct 957 GACGCGAAGCTATCATACGCCAGATTATGGCTGAACGCCTCTAAGTCAGAATCTGTACTA 898
Query 121 GAACGGGGTGATTCT-CTCCTGCACATCGTAGTCGGATACGAATAGGCTTCGGCCCCGAA 179
||| | |||| | ||| |||||| |||| | | ||||||||||||| |||
Sbjct 897 GAA-ACGACGATTTTGGTCCCGCACATGTTAGTTGTGTTTAAATAGGCTTCGGCTGTGAA 839
Query 180 CCTTA 184
|| ||
Sbjct 838 CCATA 834
>seq522
Length=1369
Score = 86.0 bits (94), Expect = 1e-14
Identities = 78/96 (81%), Gaps = 2/96 (2%)
Strand=Plus/Minus
Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60
||||||||||||| || | ||| | ||||||||| |||||| ||||| || | |||| |
Sbjct 94 GTACGAGAGGAACTGCTCA-TTC-GTATAATTGGTATTTGCGTCTGTCCGATCGGGCAAT 37
Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAAC 96
| |||||||||| ||| || ||||||||||||||
Sbjct 36 GACGCGAAGCTATCATACGCCAGATTATGGCTGAAC 1
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 819195492352
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |