Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptococcus_20neoformans_20var._20grubii_20[genbank_20GCA_5F0022220 95.1_202017-07-20] 588 sequences; 18,602,782 total letters Query= AAMG01002186.1 Length=328 Score E Sequences producing significant alignments: (Bits) Value seq547 421 1e-115 seq546 421 1e-115 >seq547 Length=2605 Score = 421 bits (466), Expect = 1e-115 Identities = 283/312 (91%), Gaps = 3/312 (1%) Strand=Plus/Minus Query 20 GAGCGAGACCTTAACCTGCTAAATAGCCAGGCCCGCTTTGGCGGGTCGCCGG-CTTCTTA 78 || ||||||||||||||||||||||| |||||| |||||||| ||||| | ||||||| Sbjct 539 GAACGAGACCTTAACCTGCTAAATAGTCAGGCCGGCTTTGGCTGGTCGTATGACTTCTTA 480 Query 79 GAGGGACTATCGGC-TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTGATGCCCT 137 |||||||| ||||| || || ||| ||||||||||||||||||||||||||||||||||| Sbjct 479 GAGGGACTGTCGGCGTCTAGTCGACGGAAGTTTGAGGCAATAACAGGTCTGTGATGCCCT 420 Query 138 TAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGT-TCATCACCTTGG 196 |||||||||||||||||||||||||||||||||| |||||| ||||| | | | |||||| Sbjct 419 TAGATGTTCTGGGCCGCACGCGCGCTACACTGACTGAGCCAGCGAGTCTTACCGCCTTGG 360 Query 197 CCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTGCAATTA 256 ||| ||| |||||||||||||| |||||| ||||||||||||||||||||||||||||| Sbjct 359 CCGAGAGGCCTGGGTAATCTTGTGAAACTCAGTCGTGCTGGGGATAGAGCATTGCAATTA 300 Query 257 TTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATTACGTCC 316 ||||||||||||||||||| ||||||||||| | |||| |||| |||||||||||||||| Sbjct 299 TTGCTCTTCAACGAGGAATACCTAGTAAGCGTGAGTCACCAGCTCGCGTTGATTACGTCC 240 Query 317 CTGCCCTTTGTA 328 |||||||||||| Sbjct 239 CTGCCCTTTGTA 228 >seq546 Length=3663 Score = 421 bits (466), Expect = 1e-115 Identities = 283/312 (91%), Gaps = 3/312 (1%) Strand=Plus/Minus Query 20 GAGCGAGACCTTAACCTGCTAAATAGCCAGGCCCGCTTTGGCGGGTCGCCGG-CTTCTTA 78 || ||||||||||||||||||||||| |||||| |||||||| ||||| | ||||||| Sbjct 2302 GAACGAGACCTTAACCTGCTAAATAGTCAGGCCGGCTTTGGCTGGTCGTATGACTTCTTA 2243 Query 79 GAGGGACTATCGGC-TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTGATGCCCT 137 |||||||| ||||| || || ||| ||||||||||||||||||||||||||||||||||| Sbjct 2242 GAGGGACTGTCGGCGTCTAGTCGACGGAAGTTTGAGGCAATAACAGGTCTGTGATGCCCT 2183 Query 138 TAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGT-TCATCACCTTGG 196 |||||||||||||||||||||||||||||||||| |||||| ||||| | | | |||||| Sbjct 2182 TAGATGTTCTGGGCCGCACGCGCGCTACACTGACTGAGCCAGCGAGTCTTACCGCCTTGG 2123 Query 197 CCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTGCAATTA 256 ||| ||| |||||||||||||| |||||| ||||||||||||||||||||||||||||| Sbjct 2122 CCGAGAGGCCTGGGTAATCTTGTGAAACTCAGTCGTGCTGGGGATAGAGCATTGCAATTA 2063 Query 257 TTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATTACGTCC 316 ||||||||||||||||||| ||||||||||| | |||| |||| |||||||||||||||| Sbjct 2062 TTGCTCTTCAACGAGGAATACCTAGTAAGCGTGAGTCACCAGCTCGCGTTGATTACGTCC 2003 Query 317 CTGCCCTTTGTA 328 |||||||||||| Sbjct 2002 CTGCCCTTTGTA 1991 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 947194430464