Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cryptococcus_20neoformans_20var._20grubii_20[genbank_20GCA_5F0022220
95.1_202017-07-20] 588 sequences; 18,602,782 total letters
Query= AAMG01002236.1
Length=287
Score E
Sequences producing significant alignments: (Bits) Value
seq548 125 1e-26
seq544 125 1e-26
seq534 125 1e-26
>seq548
Length=1168
Score = 125 bits (138), Expect = 1e-26
Identities = 142/185 (77%), Gaps = 4/185 (2%)
Strand=Plus/Minus
Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60
||||||||||||| || | ||| | ||||||||| |||||| ||||| || | |||| |
Sbjct 1079 GTACGAGAGGAACTGCTCA-TTC-GTATAATTGGTATTTGCGTCTGTCCGATCGGGCAAT 1022
Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120
| |||||||||| ||| || ||||||||||||||||||||||||||||||| | | |
Sbjct 1021 GACGCGAAGCTATCATACGCCAGATTATGGCTGAACGCCTCTAAGTCAGAATCTGTACTA 962
Query 121 GAACGGGGTGATTCT-CTCCTGCACATCGTAGTCGGATACGAATAGGCTTCGGCCCCGAA 179
||| | |||| | ||| |||||| |||| | | ||||||||||||| |||
Sbjct 961 GAA-ACGACGATTTTGGTCCCGCACATGTTAGTTGTGTTTAAATAGGCTTCGGCTGTGAA 903
Query 180 CCTTA 184
|| ||
Sbjct 902 CCATA 898
>seq544
Length=1448
Score = 125 bits (138), Expect = 1e-26
Identities = 142/185 (77%), Gaps = 4/185 (2%)
Strand=Plus/Minus
Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60
||||||||||||| || | ||| | ||||||||| |||||| ||||| || | |||| |
Sbjct 447 GTACGAGAGGAACTGCTCA-TTC-GTATAATTGGTATTTGCGTCTGTCCGATCGGGCAAT 390
Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120
| |||||||||| ||| || ||||||||||||||||||||||||||||||| | | |
Sbjct 389 GACGCGAAGCTATCATACGCCAGATTATGGCTGAACGCCTCTAAGTCAGAATCTGTACTA 330
Query 121 GAACGGGGTGATTCT-CTCCTGCACATCGTAGTCGGATACGAATAGGCTTCGGCCCCGAA 179
||| | |||| | ||| |||||| |||| | | ||||||||||||| |||
Sbjct 329 GAA-ACGACGATTTTGGTCCCGCACATGTTAGTTGTGTTTAAATAGGCTTCGGCTGTGAA 271
Query 180 CCTTA 184
|| ||
Sbjct 270 CCATA 266
>seq534
Length=1105
Score = 125 bits (138), Expect = 1e-26
Identities = 142/185 (77%), Gaps = 4/185 (2%)
Strand=Plus/Minus
Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60
||||||||||||| || | ||| | ||||||||| |||||| ||||| || | |||| |
Sbjct 1016 GTACGAGAGGAACTGCTCA-TTC-GTATAATTGGTATTTGCGTCTGTCCGATCGGGCAAT 959
Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120
| |||||||||| ||| || ||||||||||||||||||||||||||||||| | | |
Sbjct 958 GACGCGAAGCTATCATACGCCAGATTATGGCTGAACGCCTCTAAGTCAGAATCTGTACTA 899
Query 121 GAACGGGGTGATTCT-CTCCTGCACATCGTAGTCGGATACGAATAGGCTTCGGCCCCGAA 179
||| | |||| | ||| |||||| |||| | | ||||||||||||| |||
Sbjct 898 GAA-ACGACGATTTTGGTCCCGCACATGTTAGTTGTGTTTAAATAGGCTTCGGCTGTGAA 840
Query 180 CCTTA 184
|| ||
Sbjct 839 CCATA 835
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 819195333632
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |