Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cryptococcus_20neoformans_20var._20grubii_20[genbank_20GCA_5F0022221
15.1_202017-07-20] 588 sequences; 18,516,783 total letters
Query= AAMG01000304.1
Length=683
Score E
Sequences producing significant alignments: (Bits) Value
seq468 524 3e-146
seq564 159 1e-36
>seq468
Length=9985
Score = 524 bits (580), Expect = 3e-146
Identities = 529/681 (78%), Gaps = 39/681 (6%)
Strand=Plus/Minus
Query 34 TTCGACGAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAG 93
||| |||||||| ||| |||||| || ||| | ||||||| |||||| | | |||||||
Sbjct 4906 TTCTACGAGTCGCGTTACTTGGGAGTGTAGCGCAAAATGGGTGGTAAACTCCATCTAAAG 4847
Query 94 CTAAATATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACT 153
||||||||||| |||||||||||| ||||||| |||| |||||||||||||||||
Sbjct 4846 CTAAATATTGGTGGAAGACCGATAGCGAACAAGTACCGTGAGGGAAAGATGAAAAGCACT 4787
Query 154 TTGGAAAGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCGCTTGCAACCAGACT 213
||||||||||||||||| || |||||||||||||||||||||| || ||| | ||| |
Sbjct 4786 TTGGAAAGAGAGTTAAACAGTACGTGAAATTGTTGAAAGGGAAACGATTGAAGTCAGTCG 4727
Query 214 TGCCCGCAGTTGCTCAACCGGCCCCTCGGCCGGTGCACTCTTCTGCGGTCAGGCCAGCAT 273
|| | | | ||| || | || || |||| | || || | | || || |||
Sbjct 4726 TGTCTATTGG-GTTCAGCCAGT---TCTGCTGGTGTATTCC-CTTTAGACGGGTCAACAT 4672
Query 274 CAGCTCGGG-CGGTCGGATAAAGGCCCCGGGAATGTGGCCCCCTTCGGGGGGTGTTATAG 332
||| || | |||| |||||| ||| |||||||| || | |||||| | |||||||||
Sbjct 4671 CAGTTCTGATCGGT-GGATAAGGGCTGGGGGAATGTAGCACTCTTCGGAGTGTGTTATAG 4613
Query 333 CCC-------------------GGG---GTGGAATGCGGCCCGCCTGGA---CTGAGGTC 367
|| ||| | ||||||| || ||||| | | | |||
Sbjct 4612 CCTCCTGTCGCATACACTGGTTGGGACTGAGGAATGCAGCTCGCCTTTATGGCCGGGGTT 4553
Query 368 CGCGCTC---CG-GCT-AGGATGCTGGCGTAATGGTTGTAAGCGGCCCGTCTTGGAACAC 422
||| | | || ||| |||||| || | ||||| | ||| || ||||||||| |||||
Sbjct 4552 CGCCCACGTTCGAGCTTAGGATGTTGACAAAATGGCTTTAAACGACCCGTCTTGAAACAC 4493
Query 423 GGACCAAGGAGTCTAACATCTATGCGAGTGTTTGGGTGTCAAACCCGTGCGCGTAATGAA 482
||||||||||||||||||| | |||||||||||| ||||||||| || ||||||||||||
Sbjct 4492 GGACCAAGGAGTCTAACATATCTGCGAGTGTTTGAGTGTCAAACTCGAGCGCGTAATGAA 4433
Query 483 AGTGAACGGAGGTGGGAACCCGTGAGGGTGCACCATCGACCGATCCTGATGTCTTCGGAT 542
|||||| | ||| |||| || | || ||||| ||||||||||| ||| | | |||
Sbjct 4432 AGTGAATGTAGGAGGGATCCGC--AAGGAGCACCTTCGACCGATCCGGATCTTCTGTGAT 4375
Query 543 GGATTTGAGTAAGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGG 602
||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||
Sbjct 4374 GGATTTGAGTAAGAGCATATATGCTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGG 4315
Query 603 GTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGT 662
| |||||||| ||||||||||||||||||||| |||| ||||| ||||||||||||||||
Sbjct 4314 GCGAAGCCAGGGGAAACTCTGGTGGAGGCTCGTAGCGATTCTGACGTGCAAATCGATCGT 4255
Query 663 CAAATTTGGGTATAGGGGCGA 683
| |||||||||||||||||||
Sbjct 4254 CGAATTTGGGTATAGGGGCGA 4234
>seq564
Length=62951
Score = 159 bits (176), Expect = 1e-36
Identities = 108/121 (89%), Gaps = 4/121 (3%)
Strand=Plus/Minus
Query 567 TGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTG 626
|||||||||||||||||||| |||||||||||||||| |||||||| |||||||||||||
Sbjct 59524 TGGGACCCGAAAGATGGTGAGCTATGCCTGAATAGGGCGAAGCCAGGGGAAACTCTGGTG 59465
Query 627 GAGGCTCG----CAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCG 682
|||||||| |||| ||||| |||||||||||||||| |||||||| |||||||||
Sbjct 59464 GAGGCTCGTATATAGCGATTCTGATGTGCAAATCGATCGTCGAATTTGGGCATAGGGGCG 59405
Query 683 A 683
|
Sbjct 59404 A 59404
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 2079987387400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |