Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptococcus_20neoformans_20var._20grubii_20[genbank_20GCA_5F0022221 35.1_202017-07-20] 511 sequences; 18,560,305 total letters Query= AAMG01000304.1 Length=683 Score E Sequences producing significant alignments: (Bits) Value seq434 508 2e-141 seq481 159 1e-36 >seq434 Length=4975 Score = 508 bits (562), Expect = 2e-141 Identities = 528/685 (77%), Gaps = 43/685 (6%) Strand=Plus/Minus Query 34 TTCGACGAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAG 93 ||| |||||||| ||| |||||| || ||| | ||||||| |||||| | | ||||||| Sbjct 4910 TTCTACGAGTCGCGTTACTTGGGAGTGTAGCGCAAAATGGGTGGTAAACTCCATCTAAAG 4851 Query 94 CTAAATATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAA----AG 149 ||||||||||| |||||||||||| ||||||| |||| ||||||||||| || Sbjct 4850 CTAAATATTGGTGGAAGACCGATAGCGAACAAGTACCGTGAGGGAAAGATGAAAGAAAAG 4791 Query 150 CACTTTGGAAAGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCGCTTGCAACCA 209 ||||||||||||||||||||| || |||||||||||||||||||||| || ||| | || Sbjct 4790 CACTTTGGAAAGAGAGTTAAACAGTACGTGAAATTGTTGAAAGGGAAACGATTGAAGTCA 4731 Query 210 GACTTGCCCGCAGTTGCTCAACCGGCCCCTCGGCCGGTGCACTCTTCTGCGGTCAGGCCA 269 | | || | | | ||| || | | || | ||| | || || | | || || Sbjct 4730 GTCGTGTCTATTGG-GTTCAGCCAGTTCTTCTG---GTGTATTCC-CTTTAGACGGGTCA 4676 Query 270 GCATCAGCTCGGG-CGGTCGGATAAAGGCCCCGGGAATGTGGCCCCCTTCGGGGGGTGTT 328 |||||| || | |||| |||||| ||| |||||||| || | |||||| | ||||| Sbjct 4675 ACATCAGTTCTGATCGGT-GGATAAGGGCTGGGGGAATGTAGCACTCTTCGGAGTGTGTT 4617 Query 329 ATAGCCC-------------------GGG---GTGGAATGCGGCCCGCCTGGA---CTGA 363 |||||| ||| | ||||||| || ||||| | | | Sbjct 4616 ATAGCCTCCTGTCGCATACACTGGTTGGGACTGAGGAATGCAGCTCGCCTTTATGGCCGG 4557 Query 364 GGTCCGCGCTC---CG-GCT-AGGATGCTGGCGTAATGGTTGTAAGCGGCCCGTCTTGGA 418 ||| ||| | | || ||| |||||| || | ||||| | ||| || ||||||||| | Sbjct 4556 GGTTCGCCCACGTTCGAGCTTAGGATGTTGACAAAATGGCTTTAAACGACCCGTCTTGAA 4497 Query 419 ACACGGACCAAGGAGTCTAACATCTATGCGAGTGTTTGGGTGTCAAACCCGTGCGCGTAA 478 ||||||||||||||||||||||| | |||||||||||| ||||||||| || |||||||| Sbjct 4496 ACACGGACCAAGGAGTCTAACATATCTGCGAGTGTTTGAGTGTCAAACTCGAGCGCGTAA 4437 Query 479 TGAAAGTGAACGGAGGTGGGAACCCGTGAGGGTGCACCATCGACCGATCCTGATGTCTTC 538 |||||||||| | ||| |||| || | || ||||| ||||||||||| ||| | | Sbjct 4436 TGAAAGTGAATGTAGGAGGGATCCGC--AAGGAGCACCTTCGACCGATCCGGATCTTCTG 4379 Query 539 GGATGGATTTGAGTAAGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAA 598 |||||||||||||||||||||| || |||||||||||||||||||||||||||||||| Sbjct 4378 TGATGGATTTGAGTAAGAGCATATATGCTGGGACCCGAAAGATGGTGAACTATGCCTGAA 4319 Query 599 TAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGA 658 ||||| |||||||| ||||||||||||||||||||| |||| ||||| |||||||||||| Sbjct 4318 TAGGGCGAAGCCAGGGGAAACTCTGGTGGAGGCTCGTAGCGATTCTGACGTGCAAATCGA 4259 Query 659 TCGTCAAATTTGGGTATAGGGGCGA 683 ||||| ||||||||||||||||||| Sbjct 4258 TCGTCGAATTTGGGTATAGGGGCGA 4234 >seq481 Length=235307 Score = 159 bits (176), Expect = 1e-36 Identities = 108/121 (89%), Gaps = 4/121 (3%) Strand=Plus/Minus Query 567 TGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTG 626 |||||||||||||||||||| |||||||||||||||| |||||||| ||||||||||||| Sbjct 229540 TGGGACCCGAAAGATGGTGAGCTATGCCTGAATAGGGCGAAGCCAGGGGAAACTCTGGTG 229481 Query 627 GAGGCTCG----CAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCG 682 |||||||| |||| ||||| |||||||||||||||| |||||||| ||||||||| Sbjct 229480 GAGGCTCGTATATAGCGATTCTGATGTGCAAATCGATCGTCGAATTTGGGCATAGGGGCG 229421 Query 683 A 683 | Sbjct 229420 A 229420 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2079989039050