Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptococcus_20neoformans_20var._20grubii_20[genbank_20GCA_5F0022221 45.1_202017-07-20] 511 sequences; 18,557,031 total letters Query= AAMG01000941.1 Length=299 Score E Sequences producing significant alignments: (Bits) Value seq346 468 9e-130 seq379 462 4e-128 seq312 96.9 6e-18 >seq346 Length=3727 Score = 468 bits (518), Expect = 9e-130 Identities = 276/286 (97%), Gaps = 1/286 (0%) Strand=Plus/Plus Query 11 AATTACCATTGGGGCGACGGTC-ATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCT 69 |||||| ||| | |||| || |||||||||||||||||||||||||||| |||||||| Sbjct 2150 AATTACTATTACGACGACACTCCATCAGTAGGGTAAAACTAACCTGTCTCACGACGGTCT 2209 Query 70 AAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTT 129 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2210 AAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTT 2269 Query 130 CGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTG 189 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2270 CGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTG 2329 Query 190 GCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCCTCAAATTTCG 249 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| | || Sbjct 2330 GCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCCTCAAACTCCG 2389 Query 250 AGGGACTAAAGGATCGATAGGCCACACTTTCATGGTTTGTATTCAC 295 |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2390 AGGGACTAAAGGATCGATAGGCCACACTTTCATGGTTTGTATTCAC 2435 >seq379 Length=19152 Score = 462 bits (512), Expect = 4e-128 Identities = 275/286 (96%), Gaps = 1/286 (0%) Strand=Plus/Plus Query 11 AATTACCATTGGGGCGACGGTC-ATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCT 69 |||||| ||| | |||| || |||||||||| ||||||||||||||||| |||||||| Sbjct 1690 AATTACTATTACGACGACACTCCATCAGTAGGGAAAAACTAACCTGTCTCACGACGGTCT 1749 Query 70 AAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTT 129 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1750 AAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTT 1809 Query 130 CGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTG 189 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1810 CGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTG 1869 Query 190 GCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCCTCAAATTTCG 249 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| | || Sbjct 1870 GCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCCTCAAACTCCG 1929 Query 250 AGGGACTAAAGGATCGATAGGCCACACTTTCATGGTTTGTATTCAC 295 |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1930 AGGGACTAAAGGATCGATAGGCCACACTTTCATGGTTTGTATTCAC 1975 >seq312 Length=48936 Score = 96.9 bits (106), Expect = 6e-18 Identities = 56/58 (97%), Gaps = 0/58 (0%) Strand=Plus/Plus Query 77 GCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTA 134 ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 18212 GCTCACGTTCCCTATTAAGGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTA 18269 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 854395634016