Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptococcus_20neoformans_20var._20grubii_20[genbank_20GCA_5F0022221 55.1_202017-07-20] 587 sequences; 18,505,623 total letters Query= AAMG01000304.1 Length=683 Score E Sequences producing significant alignments: (Bits) Value seq512 529 7e-148 seq567 163 1e-37 >seq512 Length=8553 Score = 529 bits (586), Expect = 7e-148 Identities = 530/681 (78%), Gaps = 39/681 (6%) Strand=Plus/Minus Query 34 TTCGACGAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAG 93 ||| |||||||| ||| |||||| || ||| | ||||||| |||||| | | ||||||| Sbjct 3537 TTCTACGAGTCGCGTTACTTGGGAGTGTAGCGCAAAATGGGTGGTAAACTCCATCTAAAG 3478 Query 94 CTAAATATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACT 153 ||||||||||| |||||||||||| ||||||| |||| ||||||||||||||||| Sbjct 3477 CTAAATATTGGTGGAAGACCGATAGCGAACAAGTACCGTGAGGGAAAGATGAAAAGCACT 3418 Query 154 TTGGAAAGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCGCTTGCAACCAGACT 213 ||||||||||||||||| || |||||||||||||||||||||| || ||| | ||| | Sbjct 3417 TTGGAAAGAGAGTTAAACAGTACGTGAAATTGTTGAAAGGGAAACGATTGAAGTCAGTCG 3358 Query 214 TGCCCGCAGTTGCTCAACCGGCCCCTCGGCCGGTGCACTCTTCTGCGGTCAGGCCAGCAT 273 || | | | ||| || | || || |||| | || || | | || || ||| Sbjct 3357 TGTCTATTGG-GTTCAGCCAGT---TCTGCTGGTGTATTCC-CTTTAGACGGGTCAACAT 3303 Query 274 CAGCTCGGG-CGGTCGGATAAAGGCCCCGGGAATGTGGCCCCCTTCGGGGGGTGTTATAG 332 ||| || | |||| |||||| ||| |||||||| || | |||||| | ||||||||| Sbjct 3302 CAGTTCTGATCGGT-GGATAAGGGCTGGGGGAATGTAGCACTCTTCGGAGTGTGTTATAG 3244 Query 333 CCC-------------------GGG---GTGGAATGCGGCCCGCCTGGA---CTGAGGTC 367 || ||| | ||||||| || ||||| | | | ||| Sbjct 3243 CCTCCTGTCGCATACACTGGTTGGGACTGAGGAATGCAGCTCGCCTTTATGGCCGGGGTT 3184 Query 368 CGCGCTC---CG-GCT-AGGATGCTGGCGTAATGGTTGTAAGCGGCCCGTCTTGGAACAC 422 ||| | | || ||| |||||| || | ||||| | ||| || ||||||||| ||||| Sbjct 3183 CGCCCACGTTCGAGCTTAGGATGTTGACAAAATGGCTTTAAACGACCCGTCTTGAAACAC 3124 Query 423 GGACCAAGGAGTCTAACATCTATGCGAGTGTTTGGGTGTCAAACCCGTGCGCGTAATGAA 482 ||||||||||||||||||| | |||||||||||| ||||||||| || |||||||||||| Sbjct 3123 GGACCAAGGAGTCTAACATATCTGCGAGTGTTTGAGTGTCAAACTCGAGCGCGTAATGAA 3064 Query 483 AGTGAACGGAGGTGGGAACCCGTGAGGGTGCACCATCGACCGATCCTGATGTCTTCGGAT 542 |||||| | ||| |||| || | || ||||| ||||||||||| ||| | | |||| Sbjct 3063 AGTGAATGTAGGAGGGATCCGC--AAGGAGCACCTTCGACCGATCCGGATCTTCTGGGAT 3006 Query 543 GGATTTGAGTAAGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGG 602 ||||||||||||||||||| || |||||||||||||||||||||||||||||||||||| Sbjct 3005 GGATTTGAGTAAGAGCATATATGCTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGG 2946 Query 603 GTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGT 662 | |||||||| ||||||||||||||||||||| |||| ||||| |||||||||||||||| Sbjct 2945 GCGAAGCCAGGGGAAACTCTGGTGGAGGCTCGTAGCGATTCTGACGTGCAAATCGATCGT 2886 Query 663 CAAATTTGGGTATAGGGGCGA 683 | ||||||||||||||||||| Sbjct 2885 CGAATTTGGGTATAGGGGCGA 2865 >seq567 Length=131167 Score = 163 bits (180), Expect = 1e-37 Identities = 105/115 (91%), Gaps = 0/115 (0%) Strand=Plus/Minus Query 567 TGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTG 626 |||||||||||||||||||| |||||||||||||||| ||||||| ||||||||||||| Sbjct 127791 TGGGACCCGAAAGATGGTGAGCTATGCCTGAATAGGGCTAAGCCAGGGGAAACTCTGGTG 127732 Query 627 GAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGC 681 |||||||| | || ||||| ||||||||||||||||| |||||||||||||||| Sbjct 127731 GAGGCTCGTAACGATTCTGACGTGCAAATCGATCGTCCGATTTGGGTATAGGGGC 127677 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2079987408850