Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptococcus_20neoformans_20var._20grubii_20[genbank_20GCA_5F0022222 45.1_202017-07-20] 465 sequences; 18,610,299 total letters Query= AAMG01000941.1 Length=299 Score E Sequences producing significant alignments: (Bits) Value seq413 277 3e-72 seq409 277 3e-72 seq412 170 3e-40 seq408 170 3e-40 seq346 98.7 2e-18 >seq413 Length=80568 Score = 277 bits (306), Expect = 3e-72 Identities = 158/161 (98%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 135 TGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGC 194 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1 TGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGC 60 Query 195 CACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCCTCAAATTTCGAGGGA 254 ||||||||||||||||||||||||||||||||||| |||||||||||||| | ||||||| Sbjct 61 CACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCCCCTCTAGCCTCAAACTCCGAGGGA 120 Query 255 CTAAAGGATCGATAGGCCACACTTTCATGGTTTGTATTCAC 295 ||||||||||||||||||||||||||||||||||||||||| Sbjct 121 CTAAAGGATCGATAGGCCACACTTTCATGGTTTGTATTCAC 161 >seq409 Length=6658 Score = 277 bits (306), Expect = 3e-72 Identities = 158/161 (98%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 135 TGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGC 194 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1 TGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGC 60 Query 195 CACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCCTCAAATTTCGAGGGA 254 ||||||||||||||||||||||||||||||||||| |||||||||||||| | ||||||| Sbjct 61 CACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCCCCTCTAGCCTCAAACTCCGAGGGA 120 Query 255 CTAAAGGATCGATAGGCCACACTTTCATGGTTTGTATTCAC 295 ||||||||||||||||||||||||||||||||||||||||| Sbjct 121 CTAAAGGATCGATAGGCCACACTTTCATGGTTTGTATTCAC 161 >seq412 Length=1553 Score = 170 bits (188), Expect = 3e-40 Identities = 107/114 (94%), Gaps = 1/114 (1%) Strand=Plus/Plus Query 11 AATTACCATTGGGGCGACGGTC-ATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCT 69 |||||| ||| | ||||| || |||||||||||||||||||||||||||| |||||||| Sbjct 1440 AATTACTATTACGACGACGCTCCATCAGTAGGGTAAAACTAACCTGTCTCACGACGGTCT 1499 Query 70 AAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCGAATT 123 |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1500 AAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCGAATT 1553 >seq408 Length=1721 Score = 170 bits (188), Expect = 3e-40 Identities = 107/114 (94%), Gaps = 1/114 (1%) Strand=Plus/Plus Query 11 AATTACCATTGGGGCGACGGTC-ATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCT 69 |||||| ||| | ||||| || |||||||||||||||||||||||||||| |||||||| Sbjct 1608 AATTACTATTACGACGACGCTCCATCAGTAGGGTAAAACTAACCTGTCTCACGACGGTCT 1667 Query 70 AAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCGAATT 123 |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1668 AAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCGAATT 1721 >seq346 Length=48949 Score = 98.7 bits (108), Expect = 2e-18 Identities = 57/59 (97%), Gaps = 0/59 (0%) Strand=Plus/Plus Query 77 GCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTAT 135 ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 18215 GCTCACGTTCCCTATTAAGGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTAT 18273 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 854396027040