Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptococcus_20neoformans_20var._20grubii_20[genbank_20GCA_5F9001771 65.1_202017-04-19] 1,144 sequences; 18,447,454 total letters Query= AAMG01000278.1 Length=318 Score E Sequences producing significant alignments: (Bits) Value seq329 297 3e-78 >seq329 Length=583 Score = 297 bits (328), Expect = 3e-78 Identities = 210/239 (88%), Gaps = 1/239 (0%) Strand=Plus/Plus Query 80 TTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTCGAATACATTAGCATGGAATAATA 139 ||||||||||||||||||||||||||||| | || |||||||||||||||||||||||| Sbjct 3 TTGAAAAAATTAGAGTGTTCAAAGCAGGCAATCGCCCGAATACATTAGCATGGAATAATA 62 Query 140 GAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGATTAATAGGGA 199 |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 63 GAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGATCGCCGTAATGATTAATAGGGA 122 Query 200 TAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTATTGAAGACTA 259 |||||||| | |||||| ||| ||||||||||||||| |||| | |||||| | Sbjct 123 CGGTCGGGGGCATTGGTATTCCGTTGCTAGAGGTGAAATTCTTAGATTGACGGAAGACCA 182 Query 260 ACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAACGAAAGTTAGGGG 318 || ||||||||||| || ||||||| ||||||||| |||| ||||||| |||||||| Sbjct 183 ACAACTGCGAAAGCATTTGCCAAGGACGTTTTCATTGATCA-AGAACGAAGGTTAGGGG 240 Score = 203 bits (224), Expect = 6e-50 Identities = 153/179 (85%), Gaps = 1/179 (1%) Strand=Plus/Minus Query 140 GAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGATTAATAGGGA 199 |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 525 GAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGATCGCCGTAATGATTAATAGGGA 466 Query 200 TAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTATTGAAGACTA 259 |||||||| | |||||| ||| ||||||||||||||| |||| | |||| | | Sbjct 465 CGGTCGGGGGCATTGGTATTCCGTTGCTAGAGGTGAAATTCTTAGATTGACGGAAGGCCA 406 Query 260 ACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAACGAAAGTTAGGGG 318 || ||||||||||| || ||||||| ||||||||| |||| ||||||| |||||||| Sbjct 405 ACAACTGCGAAAGCATTTGCCAAGGACGTTTTCATTGATCA-AGAACGAAGGTTAGGGG 348 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 915189530112