Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptococcus_20neoformans_20var._20grubii_20[genbank_20GCA_5F9001771 65.1_202017-04-19] 1,144 sequences; 18,447,454 total letters Query= AAMG01001884.1 Length=191 Score E Sequences producing significant alignments: (Bits) Value seq329 197 1e-48 >seq329 Length=583 Score = 197 bits (218), Expect = 1e-48 Identities = 146/169 (86%), Gaps = 1/169 (1%) Strand=Plus/Plus Query 19 TTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTCGAATACATTACCATGGAATAATA 78 ||||||||||||||| ||||||||||||| | || ||||||||||| |||||||||||| Sbjct 3 TTGAAAAAATTAGAGTGTTCAAAGCAGGCAATCGCCCGAATACATTAGCATGGAATAATA 62 Query 79 GAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTAATGATAAATACGG 138 |||||||||||||||||||||||||| ||||||||||| || |||||||||| |||| || Sbjct 63 GAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGATCG-CCGTAATGATTAATAGGG 121 Query 139 ATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGATT 187 | |||||||| | |||||| ||| | ||||||||||||| |||| Sbjct 122 ACGGTCGGGGGCATTGGTATTCCGTTGCTAGAGGTGAAATTCTTAGATT 170 Score = 116 bits (128), Expect = 4e-24 Identities = 92/109 (84%), Gaps = 1/109 (1%) Strand=Plus/Minus Query 79 GAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTAATGATAAATACGG 138 |||||||||||||||||||||||||| ||||||||||| || |||||||||| |||| || Sbjct 525 GAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGATCG-CCGTAATGATTAATAGGG 467 Query 139 ATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGATT 187 | |||||||| | |||||| ||| | ||||||||||||| |||| Sbjct 466 ACGGTCGGGGGCATTGGTATTCCGTTGCTAGAGGTGAAATTCTTAGATT 418 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511994325760