Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cryptococcus_20neoformans_20var._20grubii_20[genbank_20GCA_5F9001771
65.1_202017-04-19] 1,144 sequences; 18,447,454 total letters
Query= AAMG01001884.1
Length=191
Score E
Sequences producing significant alignments: (Bits) Value
seq329 197 1e-48
>seq329
Length=583
Score = 197 bits (218), Expect = 1e-48
Identities = 146/169 (86%), Gaps = 1/169 (1%)
Strand=Plus/Plus
Query 19 TTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTCGAATACATTACCATGGAATAATA 78
||||||||||||||| ||||||||||||| | || ||||||||||| ||||||||||||
Sbjct 3 TTGAAAAAATTAGAGTGTTCAAAGCAGGCAATCGCCCGAATACATTAGCATGGAATAATA 62
Query 79 GAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTAATGATAAATACGG 138
|||||||||||||||||||||||||| ||||||||||| || |||||||||| |||| ||
Sbjct 63 GAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGATCG-CCGTAATGATTAATAGGG 121
Query 139 ATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGATT 187
| |||||||| | |||||| ||| | ||||||||||||| ||||
Sbjct 122 ACGGTCGGGGGCATTGGTATTCCGTTGCTAGAGGTGAAATTCTTAGATT 170
Score = 116 bits (128), Expect = 4e-24
Identities = 92/109 (84%), Gaps = 1/109 (1%)
Strand=Plus/Minus
Query 79 GAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTAATGATAAATACGG 138
|||||||||||||||||||||||||| ||||||||||| || |||||||||| |||| ||
Sbjct 525 GAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGATCG-CCGTAATGATTAATAGGG 467
Query 139 ATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGATT 187
| |||||||| | |||||| ||| | ||||||||||||| ||||
Sbjct 466 ACGGTCGGGGGCATTGGTATTCCGTTGCTAGAGGTGAAATTCTTAGATT 418
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 511994325760
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |