Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptococcus_20neoformans_20var._20grubii_20[genbank_20GCA_5F9001771 65.1_202017-04-19] 1,144 sequences; 18,447,454 total letters Query= AAMG01002199.1 Length=543 Score E Sequences producing significant alignments: (Bits) Value seq113 286 1e-74 seq103 134 5e-29 >seq113 Length=178 Score = 286 bits (316), Expect = 1e-74 Identities = 171/178 (96%), Gaps = 1/178 (1%) Strand=Plus/Plus Query 254 CCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGGTCTTCTTTCCCC 313 |||| || ||| |||||||| ||| |||||||||||||||||||||||||||||||||| Sbjct 2 CCTC-CATGTCTTTTCACAATGTCAAACTAGAGTCAAGCTCAACAGGGTCTTCTTTCCCC 60 Query 314 GCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAG 373 |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 61 GCTGATTCTGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAG 120 Query 374 TGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCATTTGGCT 431 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 121 TGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCATTTGGCT 178 >seq103 Length=183 Score = 134 bits (148), Expect = 5e-29 Identities = 82/87 (94%), Gaps = 0/87 (0%) Strand=Plus/Plus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 |||||| || || |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 97 CTTTTGTTCCACTGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATC 156 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAA 93 |||||||||||||||||||||||||| Sbjct 157 TTTTAACAGATGTGCCGCCCCAGCCAA 183 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1635181293312