Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cryptococcus_20neoformans_20var._20grubii_20[genbank_20GCA_5F9001771
65.1_202017-04-19] 1,144 sequences; 18,447,454 total letters
Query= NC_010671.1
Length=124279
Score E
Sequences producing significant alignments: (Bits) Value
seq259 255 5e-63
seq900 89.7 4e-13
>seq259
Length=98840
Score = 255 bits (282), Expect = 5e-63
Identities = 506/740 (68%), Gaps = 12/740 (2%)
Strand=Plus/Minus
Query 66002 GGAAGGGCAAGAGATGCGAGGTTGCAGACAGCTATCTCGTCAGGAGCGGTATACTCGACA 66061
||||| |||||||| || || || |||||||| | || ||||||| | |||||| |
Sbjct 84334 GGAAGAGCAAGAGAAGCAAGATTACAGACAGCAACTTCATCAGGAGAAGAATACTCCATG 84275
Query 66062 ATTTCGGTGCACAGATTACTGCAGCGTATGGTGCCCAAATTCTGTTGATTACTCTTGCGA 66121
||||| || || || |||||| | ||||| || | | || ||| || ||||
Sbjct 84274 ATTTCAGTACAGAGGTTACTGGATTTGATGGTACCAAGGTGCTTTTGGTTGGACTTGGAG 84215
Query 66122 TTGCATGCATCCTTGTACATCATGTACGGAGTGCCGGTCTCAACTTGGGACTCAATGATG 66181
||| ||||||||||| ||||| || || ||||| ||| | ||| | ||||
Sbjct 84214 TTGGCAGCATCCTTGTAGCAGATGTAAGGGACACCAGTCTCGGTTTGAGCCTCGAGGATG 84155
Query 66182 GCGTGCCAAAGAGCGCGTGCCTTCACCGTACGTACCGCCCTACCTTTGCGT-TCGTAATG 66240
||| |||||| | || || | || | | |||| | ||| | |||||
Sbjct 84154 GCGAACCAAAGCTTCTGGGCTTTGATAGTTT-TCCTTCCCTTGCCCTGCCTCTCGTAGCT 84096
Query 66241 TTCGTAGAGGTGTTCGAAGGATTCACCCCATACTTCGGACAGACATGGACACTTGTGTGG 66300
|| || || | ||| || |||||| | || |||| || | || |||| | ||
Sbjct 84095 CTCATAAAGCTTTTCAAATTCTTCACCGTAAACGTCGGCAAGTCCAGGGCACTCGGCGGG 84036
Query 66301 ACACATCAGCGACCAATCACCATCCTGTTCTACACGACGCATAAATAGATCAGGTATCCA 66360
|||||| || | |||||| ||||| ||| ||||| ||| || ||||| | |||||
Sbjct 84035 ACACATAAGAGTCCAATCCCCATCGGATTCGACACGCTTCATGAAAAGATCGGAGATCCA 83976
Query 66361 GAGGGCGTAGAAGAGATCGCGTGCTCGTTGCTCCTCAATGCCGTGATTTTTGCGCAAGTC 66420
|||||||||||| ||||| || |||||| |||||| | || || || || | |||||
Sbjct 83975 GAGGGCGTAGAAAAGATCACGAGCTCGTACCTCCTCCTTACCATGGTTCTTCCTTAAGTC 83916
Query 66421 GAGGAACTCAAAGATGTCGGCATGCCATGGTTCCAGGTAGATGGCGAACGAGCCCATACG 66480
| ||| ||||| | || || ||||| || || || ||||||||||| | || |||
Sbjct 83915 AATGAAGTCAAATACATCAGCGTGCCAAGGCTCAAGATAGATGGCGAAGGCACCAGGACG 83856
Query 66481 TTTGCCGCCACCTTGGTCGACGTAGCGAGC---GACATTGTTGAAGACACGCAACATCGG 66537
||| |||||||| || ||||| ||||| | | | || ||| | || | ||| ||
Sbjct 83855 CTTGTTACCACCTTGATCAACGTATCGAGCTGTGGCGTCGT--AAG-CTCGGAGCATAGG 83799
Query 66538 TACGAGCCCGTTAGATTTGCCATTGGTGCCGTCGATGGGGGATCCTCGTGCCCGTATATC 66597
| || ||||| || | |||||||| ||| | ||| ||| || || || ||||
Sbjct 83798 AATGATGCCGTTGGAGTAACCATTGGTACCGGCAATGTAGGAGCCCTTCGCACGGATATT 83739
Query 66598 GTGAACATTCAGACCAATACCACCGGCCGTCTTCGAGATGGCAGCACA-ATC-GGCCACT 66655
||||| | ||||||||||||||||| ||||| ||||| |||||| || | | |
Sbjct 83738 GTGAATGTGAAGACCAATACCACCGGCAGTCTTGGAGATCTGAGCACAGGTCTTGAGAGT 83679
Query 66656 GTCCGGAATATGCCGTCAATGGAGTCACCCTTGATGGTCAGGAGGTAGCATGAACTAAGT 66715
|| | | || || |||||||||||| |||| |||| || |||| ||||||| | |
Sbjct 83678 ATC--GTAGATACCATCAATGGAGTCATCCTTCATGGCCACGAGGAAGCATGATGACATT 83621
Query 66716 TGGGGTTTGGGTGTGGCGGC 66735
|||||| ||| || ||||
Sbjct 83620 TGGGGTCGGGGAGTACCGGC 83601
>seq900
Length=79834
Score = 89.7 bits (98), Expect = 4e-13
Identities = 124/174 (71%), Gaps = 0/174 (0%)
Strand=Plus/Minus
Query 61738 GACGCTTTGCCCGTCTCACTCATCGGCATGAATTGTGGACTAATGTCGCAGTATATTGAA 61797
|||||| | |||||||| || ||||| ||||| || |||| || || |||||
Sbjct 63493 GACGCTCTCCCCGTCTCTCTTATCGGTATGAACGCCAAGCTCATGTGCCAATACATTGAG 63434
Query 61798 TTTGTTGCCGACCGTCTGTTGGTCGATTTGGGTATGAAGCGGATCTATAATACGAAAAAC 61857
||||||||||||||||| | || | |||||| | || ||| | || | |||
Sbjct 63433 TTTGTTGCCGACCGTCTTCTTGTTGCTTTGGGCAACGAGAAGATTTGGAACTCTGCCAAC 63374
Query 61858 CCATTTGATTTCATGGACATGATTTCGCTGGATGGCAAGACGAATTTTTTCGAG 61911
|| ||||| || ||||| ||||| || || | |||||| | || |||||||||
Sbjct 63373 CCCTTTGACTTTATGGAGATGATCTCTCTCCAAGGCAAGGCCAACTTTTTCGAG 63320
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 397562456908160
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |