Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptococcus_20neoformans_20var._20grubii_20[genbank_20GCA_5F9001771 75.1_202017-04-19] 1,201 sequences; 18,463,082 total letters Query= AAMG01000304.1 Length=683 Score E Sequences producing significant alignments: (Bits) Value seq972 273 9e-71 >seq972 Length=64566 Score = 273 bits (302), Expect = 9e-71 Identities = 215/256 (84%), Gaps = 10/256 (4%) Strand=Plus/Minus Query 425 ACCAAGGAGTCTAACATCTATGCGAGTGTTTGGGTGTCAAACCCGTGCGCGTAATGAAAG 484 ||||||||||||||||| | |||||||||||| |||||||| || |||||||||||||| Sbjct 58421 ACCAAGGAGTCTAACATATCTGCGAGTGTTTGATTGTCAAACTCGAGCGCGTAATGAAAG 58362 Query 485 TGAACGGAGGTGGGAACCCGTGAGGGTGCACCATCGACCGATCCTGATGTCTTCGGATGG 544 |||| | ||| |||| || | || ||||| ||||||||||| ||| | | ||||| Sbjct 58361 TGAATGTAGGAGGGATCCGC--AAGGAGCACCTTCGACCGATCCGGATCTTCTGTGATGG 58304 Query 545 ATTTGAGTAAGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGT 604 ||||||||||||||||| || ||||||||||||||||||||||||||||||||||||| Sbjct 58303 ATTTGAGTAAGAGCATATATGCTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGC 58244 Query 605 GAAGCCAGAGGAAACTCTGGTGGAGGCTCG----CAGCGGTTCTGGCGTGCAAATCGATC 660 |||||||| ||||||||||||||||||||| |||| ||||| ||||||||| Sbjct 58243 GAAGCCAGGGGAAACTCTGGTGGAGGCTCGTATATAGCGATTCTG----ATAAATCGATC 58188 Query 661 GTCAAATTTGGGTATA 676 ||| |||||||||||| Sbjct 58187 GTCGAATTTGGGTATA 58172 Score = 176 bits (194), Expect = 2e-41 Identities = 109/117 (93%), Gaps = 0/117 (0%) Strand=Plus/Minus Query 567 TGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTG 626 |||||||||||||||||||||||| |||||||||||| ||||| || ||||||||||||| Sbjct 58153 TGGGACCCGAAAGATGGTGAACTAGGCCTGAATAGGGCGAAGCGAGGGGAAACTCTGGTG 58094 Query 627 GAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683 |||||||| |||| ||||| ||||||||||||||||| ||||||||||||||||||| Sbjct 58093 GAGGCTCGTAGCGATTCTGACGTGCAAATCGATCGTCGAATTTGGGTATAGGGGCGA 58037 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2079974238550