Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cystobasidium_20pallidum_20[genbank_20GCA_5F001599955.1_202016-03- 01] 69 sequences; 21,721,408 total letters Query= AAMG01002199.1 Length=543 Score E Sequences producing significant alignments: (Bits) Value seq10 250 8e-64 >seq10 Length=661985 Score = 250 bits (276), Expect = 8e-64 Identities = 165/182 (91%), Gaps = 3/182 (2%) Strand=Plus/Plus Query 178 CTTCATTGATTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCGCCGAAACGGC 237 ||||||||| ||||||||||||| ||||||||||||||||||||| |||||||| || Sbjct 1 CTTCATTGAATAAGTAAAAAAACTATAAGGGTAGTGGTATTTCACCGGCGCCGAA---GC 57 Query 238 TCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAAC 297 |||||||||||||||||| | | ||| |||||||| ||| |||||||||||||||||| Sbjct 58 TCCCACTTATTCTACACCCCCTATGTCTTTTCACAATGTCAAACTAGAGTCAAGCTCAAC 117 Query 298 AGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGA 357 ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 118 AGGGTCTTCTTTCCCCGCTGATTTTGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGA 177 Query 358 TA 359 || Sbjct 178 TA 179 Score = 82.4 bits (90), Expect = 2e-13 Identities = 50/53 (94%), Gaps = 0/53 (0%) Strand=Plus/Plus Query 355 AGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACT 407 || |||||||||| |||||||| |||||||||||||||||||||||||||||| Sbjct 25286 AGTTAGTAGATAGAGACAGTGGCAATCTCGTTAATCCATTCATGCGCGTCACT 25338 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1635198871712