Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Golubevia_20pallescens_20[genbank_20GCA_5F001599655.1_202016-03-01] 63 sequences; 27,756,302 total letters Query= AAMG01000304.1 Length=683 Score E Sequences producing significant alignments: (Bits) Value seq48 565 1e-158 >seq48 Length=6820 Score = 565 bits (626), Expect = 1e-158 Identities = 536/682 (79%), Gaps = 42/682 (6%) Strand=Plus/Plus Query 35 TCGACGAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGC 94 || ||||||||||||||||||||||||||||| ||||||| |||||||| | |||||||| Sbjct 1416 TCCACGAGTCGAGTTGTTTGGGAATGCAGCTCAAAATGGGTGGTAAATTCCATCTAAAGC 1475 Query 95 TAAATATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTT 154 |||||||||| |||||||||||||| ||||||| |||| |||||||||||||||||| Sbjct 1476 TAAATATTGGGGAGAGACCGATAGCGAACAAGTACCGTGAGGGAAAGATGAAAAGCACTT 1535 Query 155 TGGAAAGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCGCTTGCAACCAGACTT 214 |||||||||||||||| || |||||||||||| ||||||||||||||| | ||||| | Sbjct 1536 TGGAAAGAGAGTTAAACAGTACGTGAAATTGTCGAAAGGGAAGCGCTTRAAGTCAGACAT 1595 Query 215 GCCCGCAGTTGCTCAACC--GGCC--CCTCGGCCGGTGCACTCTTCTGCGGTCAGGCCAG 270 || || | |||| || || ||| || || | | || | | |||||||| Sbjct 1596 GCT-GCTGAGACTCAGCCTTGGTTTTCCTTGG----TGTATTTCTCAGTTGGCAGGCCAG 1650 Query 271 CATCAGCTCGGGCGGTCGGATAAAGGCCCCGGGAATGTGGCCCCCTTCGGGGGGTGTTAT 330 |||||| | ||| || |||||| || |||||||||| ||| || ||||||| Sbjct 1651 CATCAGTTTTGGCTGTTGGATAAGGGTAGGAGGAATGTGGCATCCTC--GGATGTGTTAT 1708 Query 331 AGCC---------------CGGGGTGGAATGCGGCCCGCC-TG-GACTGAGGTCCGCGCT 373 |||| ||| ||| || || ||| || | || || | | || Sbjct 1709 AGCCTCTTACTGGATACWACGGCTGGGACTGAGGAACGCAGTGTGCCTTCGGGCGGGTCT 1768 Query 374 CCGGC------------TAGGATGCTGGCGTAATGGTTGTAAGCGGCCCGTCTTGGAACA 421 ||| ||||||||||||||||||| | |||||| ||||||||| |||| Sbjct 1769 TCGGACACCTTCACACTTAGGATGCTGGCGTAATGGCTTTAAGCGACCCGTCTTGAAACA 1828 Query 422 CGGACCAAGGAGTCTAACATCTATGCGAGTGTTTGGGTGTCAAACCCGTGCGCGTAATGA 481 ||||| |||||||||||||| | ||||||| |||||||| ||||||| ||| ||||| Sbjct 1829 CGGACYAAGGAGTCTAACATGTTTGCGAGTCTTTGGGTGGTAAACCCGCAGGCGCAATGA 1888 Query 482 AAGTGAACGGAGGTGGGAACCCGTGAGGGTGCACCATCGACCGATCCTGATGTCTTCGGA 541 ||||||| | |||||||| || || ||| |||||||||||||| |||||| |||| || Sbjct 1889 AAGTGAATGCAGGTGGGATCC-GTAAGGA-GCACCATCGACCGAACCTGATCTCTTGTGA 1946 Query 542 TGGATTTGAGTAAGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAG 601 || |||||||||||||| | |||||||||||||||||||||||||||||||||| ||| Sbjct 1947 CGGTTTTGAGTAAGAGCACATATGTTGGGACCCGAAAGATGGTGAACTATGCCTGAGTAG 2006 Query 602 GGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCG 661 || |||||||||||||||||||||||||||||| |||||||||| ||||||||||||||| Sbjct 2007 GGCGAAGCCAGAGGAAACTCTGGTGGAGGCTCGTAGCGGTTCTGACGTGCAAATCGATCG 2066 Query 662 TCAAATTTGGGTATAGGGGCGA 683 ||||| ||||||||||| |||| Sbjct 2067 TCAAACTTGGGTATAGGRGCGA 2088 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2079998648650