Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Golubevia_20pallescens_20[genbank_20GCA_5F001599655.1_202016-03-01]
63 sequences; 27,756,302 total letters
Query= AAMG01000304.1
Length=683
Score E
Sequences producing significant alignments: (Bits) Value
seq48 565 1e-158
>seq48
Length=6820
Score = 565 bits (626), Expect = 1e-158
Identities = 536/682 (79%), Gaps = 42/682 (6%)
Strand=Plus/Plus
Query 35 TCGACGAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGC 94
|| ||||||||||||||||||||||||||||| ||||||| |||||||| | ||||||||
Sbjct 1416 TCCACGAGTCGAGTTGTTTGGGAATGCAGCTCAAAATGGGTGGTAAATTCCATCTAAAGC 1475
Query 95 TAAATATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTT 154
|||||||||| |||||||||||||| ||||||| |||| ||||||||||||||||||
Sbjct 1476 TAAATATTGGGGAGAGACCGATAGCGAACAAGTACCGTGAGGGAAAGATGAAAAGCACTT 1535
Query 155 TGGAAAGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCGCTTGCAACCAGACTT 214
|||||||||||||||| || |||||||||||| ||||||||||||||| | ||||| |
Sbjct 1536 TGGAAAGAGAGTTAAACAGTACGTGAAATTGTCGAAAGGGAAGCGCTTRAAGTCAGACAT 1595
Query 215 GCCCGCAGTTGCTCAACC--GGCC--CCTCGGCCGGTGCACTCTTCTGCGGTCAGGCCAG 270
|| || | |||| || || ||| || || | | || | | ||||||||
Sbjct 1596 GCT-GCTGAGACTCAGCCTTGGTTTTCCTTGG----TGTATTTCTCAGTTGGCAGGCCAG 1650
Query 271 CATCAGCTCGGGCGGTCGGATAAAGGCCCCGGGAATGTGGCCCCCTTCGGGGGGTGTTAT 330
|||||| | ||| || |||||| || |||||||||| ||| || |||||||
Sbjct 1651 CATCAGTTTTGGCTGTTGGATAAGGGTAGGAGGAATGTGGCATCCTC--GGATGTGTTAT 1708
Query 331 AGCC---------------CGGGGTGGAATGCGGCCCGCC-TG-GACTGAGGTCCGCGCT 373
|||| ||| ||| || || ||| || | || || | | ||
Sbjct 1709 AGCCTCTTACTGGATACWACGGCTGGGACTGAGGAACGCAGTGTGCCTTCGGGCGGGTCT 1768
Query 374 CCGGC------------TAGGATGCTGGCGTAATGGTTGTAAGCGGCCCGTCTTGGAACA 421
||| ||||||||||||||||||| | |||||| ||||||||| ||||
Sbjct 1769 TCGGACACCTTCACACTTAGGATGCTGGCGTAATGGCTTTAAGCGACCCGTCTTGAAACA 1828
Query 422 CGGACCAAGGAGTCTAACATCTATGCGAGTGTTTGGGTGTCAAACCCGTGCGCGTAATGA 481
||||| |||||||||||||| | ||||||| |||||||| ||||||| ||| |||||
Sbjct 1829 CGGACYAAGGAGTCTAACATGTTTGCGAGTCTTTGGGTGGTAAACCCGCAGGCGCAATGA 1888
Query 482 AAGTGAACGGAGGTGGGAACCCGTGAGGGTGCACCATCGACCGATCCTGATGTCTTCGGA 541
||||||| | |||||||| || || ||| |||||||||||||| |||||| |||| ||
Sbjct 1889 AAGTGAATGCAGGTGGGATCC-GTAAGGA-GCACCATCGACCGAACCTGATCTCTTGTGA 1946
Query 542 TGGATTTGAGTAAGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAG 601
|| |||||||||||||| | |||||||||||||||||||||||||||||||||| |||
Sbjct 1947 CGGTTTTGAGTAAGAGCACATATGTTGGGACCCGAAAGATGGTGAACTATGCCTGAGTAG 2006
Query 602 GGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCG 661
|| |||||||||||||||||||||||||||||| |||||||||| |||||||||||||||
Sbjct 2007 GGCGAAGCCAGAGGAAACTCTGGTGGAGGCTCGTAGCGGTTCTGACGTGCAAATCGATCG 2066
Query 662 TCAAATTTGGGTATAGGGGCGA 683
||||| ||||||||||| ||||
Sbjct 2067 TCAAACTTGGGTATAGGRGCGA 2088
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 2079998648650
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |