Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Golubevia_20pallescens_20[genbank_20GCA_5F001599655.1_202016-03-01] 63 sequences; 27,756,302 total letters Query= AAMG01002244.1 Length=504 Score E Sequences producing significant alignments: (Bits) Value seq38 354 2e-95 seq23 273 7e-71 seq5 87.8 5e-15 >seq38 Length=18728 Score = 354 bits (392), Expect = 2e-95 Identities = 235/256 (92%), Gaps = 5/256 (2%) Strand=Plus/Minus Query 101 CCTTGGATGTGGTAGCCGTTTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGT 160 |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 18728 CCTTGGATGTGGTAGCCGTTTCTCAGGCTCCCTCTCCGGAATCGAACCCTTATTCCCCGT 18669 Query 161 TACCCGTTGATACCATGGTAGGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATT 220 ||||||||| ||||||||||||| ||||||||||||||||||||||||||||||| ||| Sbjct 18668 TACCCGTTGCAACCATGGTAGGCCTCTATCCTACCATCGAAAGTTGATAGGGCAGATATT 18609 Query 221 TGAATGAACCATCGCCGGCTCAAGGCCATGCGATTCGTTAAGTTATTATGAATCACCAAG 280 |||||||| |||| ||||| |||||||||| |||||| |||||||||||| |||||||| Sbjct 18608 TGAATGAAGCATCACCGGCACAAGGCCATGTGATTCGAGAAGTTATTATGATTCACCAAG 18549 Query 281 GAGCCCCGAAGGGCGTTGGTTTTTTATCTAATAAATACACCCCTTCCGAAGTCGGGG-TT 339 | | |||||||| ||||| |||||||||||||||||||||||||||||||| |||| || Sbjct 18548 G-GACCCGAAGG--GTTGG-TTTTTATCTAATAAATACACCCCTTCCGAAGTTGGGGCTT 18493 Query 340 TTTAGCATGTATTAGC 355 || |||||||| |||| Sbjct 18492 TTAAGCATGTAGTAGC 18477 >seq23 Length=563827 Score = 273 bits (302), Expect = 7e-71 Identities = 168/179 (94%), Gaps = 0/179 (0%) Strand=Plus/Minus Query 1 GTACTCATTCCAATTACAAGACCCAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCT 60 |||||||||||||||| |||||| | || |||||| ||| |||||||||||||||||| Sbjct 179 GTACTCATTCCAATTATAAGACCTATAAAAGCCCTATATTGTTATTTATTGTCACTACCT 120 Query 61 CCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTT 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 119 CCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTT 60 Query 121 TCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGT 179 |||||||||||||||||||||||||||||| |||||||||||||||||| |||||||| Sbjct 59 TCTCAGGCTCCCTCTCCGGAATCGAACCCTTATTCCCCGTTACCCGTTGCAACCATGGT 1 >seq5 Length=1308857 Score = 87.8 bits (96), Expect = 5e-15 Identities = 63/73 (86%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 338 TTTTTAGCATGTATTAGCTCTAGAATTACCACGGTTATCCATGTAGTAAGGTACTATCAA 397 |||| ||||||||||||||||||||| ||| | |||||||||| || ||| ||| | ||| Sbjct 133649 TTTTAAGCATGTATTAGCTCTAGAATCACCTCAGTTATCCATGCAGCAAGATACCAACAA 133590 Query 398 ATAAACGATAACT 410 |||||| |||||| Sbjct 133589 ATAAACTATAACT 133577 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1510399048448