Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Golubevia_20pallescens_20[genbank_20GCA_5F001599655.1_202016-03-01] 63 sequences; 27,756,302 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq28 224 8e-54 seq23 138 9e-28 seq12 87.8 1e-12 >seq28 Length=226377 Score = 224 bits (248), Expect = 8e-54 Identities = 744/1140 (65%), Gaps = 34/1140 (3%) Strand=Plus/Minus Query 65794 ACCCATCAGGACAAAAGTGTCGGCCAGACCTTGAACTCCAATACCGATGGGACGATGACG 65853 |||||| | | |||| || || ||||||||||| || || ||||| ||||||||||| Sbjct 217942 ACCCATGATCATGAAAGCATCAGCTAGACCTTGAACACCGATTCCGATTGGACGATGACG 217883 Query 65854 CAAATTGGAACGTCTCGCCTCAGGTACAGGGTAGTAATTGATATCGATAATGCGATTCAA 65913 || |||||||| | || || ||||||||||| ||||| ||||| || || | Sbjct 217882 GAAGTTGGAACGACGAGCTTCCTCGACAGGGTAGTAGTTGATGTCGATGATCTTGTTGA- 217824 Query 65914 ATTGCGTGTCACCACATGCAC---GATACGT--CGCAATTGTTCGAAATCAAAATGTTTA 65968 || || || ||| | || || | | | ||||||| || || Sbjct 217823 ----GGTTTCCACAAATGACCTTGGAGACCTTGTGGAGACGTTCGAAGTC-------GTA 217775 Query 65969 GGACGATCGGGAGTGCCGGACACCACAAACTTGGGAAGGGCAAGAGATGCGAGGTTGCAG 66028 || | | || || | | | | || | ||||| || | || || | ||||||| Sbjct 217774 GGTC--TTGGTAG---CAGCGTCGATGAAGGTTGGAAGAGCGATGGAAGCCAAGTTGCAG 217720 Query 66029 ACAGCTATCTCGTCAGGAGCGGTATACTCGACAATTTCGGTGCACAGATTACTGCAGCGT 66088 || |||| || || ||||| | || |||| ||||| || || || || ||| Sbjct 217719 ACGGCTACTTCATCCGGAGCACTGTATTCGATGATTTCAGTACAAAGGTTTGAGCACTTG 217660 Query 66089 ATGGTGCCCAAATTCTGTTGATTACTCTTGC-GATTGCATGCATCCTTGTACATCATGTA 66147 ||||| || | |||| || |||||||| | | ||||| || |||||||| | |||||| Sbjct 217659 ATGGTTCCTAGGTTCTTCTGGTTACTCTTTCTGTTTGCA-GCGTCCTTGTAAAGCATGTA 217601 Query 66148 CGGAGTGCCGGTCTCAACTTGGGACTCAATGATGGCGTGCCAAAGAGCGCGTGCCTTCAC 66207 ||| | || || || ||| | || | |||||| | |||||| | || || || Sbjct 217600 AGGATTTCCAGTTTCGGTTTGAGCTTCCAAGATGGCATACCAAAGCTTTTGAGCTTTGAC 217541 Query 66208 CGTACGTACCGCCCTACCTTTGCGTTCGTAATGTTCGTAGAGGTGTTCGAAGGATTCACC 66267 || | || ||||||| | |||||| | ||| || |||||| || || Sbjct 217540 GGTTCTCTTGGCTCTACCTTCGGATTCGTACTTGGTGTAAAGAGCTTCGAATTCCTCTCC 217481 Query 66268 CCATACTTCGGACAGACATGGACACTTGTGTGGACACATCAGCGACCAATCACCATCCTG 66327 | || || | |||| ||| || | ||||| | || |||||||| | | || Sbjct 217480 GTAGACGTCAGCGAGACCTGGGCATTCTCCAGGACAAAGTAGAGACCAATCCTCGTTCTT 217421 Query 66328 TTCTACACGACGCATAAATAGATCAGGTATCCAGAGGGCGTAGAAGAGATCGCGTGCTCG 66387 ||||| | ||| || || || || ||||| || |||||||| || || | || || Sbjct 217420 CTCTACTCTCTTCATGAAGAGGTCTGGAATCCAAAGAGCGTAGAACAGTTCTCTGGCACG 217361 Query 66388 TTGCTCCTCAATGCCGTGATTTTTGCGCAAGTCGAGGAACTCAAAGATGTCGGCATGCCA 66447 ||||| | ||||| || || || | || | ||| || |||| ||| | |||||| Sbjct 217360 AACTTCCTCCTTTCCGTGGTTCTTACGTAGATCCAAGAATTCGAAGACGTCTGAATGCCA 217301 Query 66448 TGGTTCCAGGTAGATGGCGAACGAGCCCATACGTTTGCCGCCACCTTGGTCGACGTAGCG 66507 ||| |||| ||||||||| || | || ||| ||| || ||||| |||||||| | Sbjct 217300 TGGCTCCAAGTAGATGGCAAAGGCACCTGGACGCTTGTTTCCTCCTTGATCGACGTATCT 217241 Query 66508 AGCGACATTGTTGAAGACACGCAACATCGGTACGAGCCCGTTAGATTTGCCATTGGTGCC 66567 ||| |||||| ||||||| | ||| || |||| ||||| || |||||||| || Sbjct 217240 AGCAGTGTTGTTGTAGACACGTAGCATGGGAACGATACCGTTGGAGAATCCATTGGTTCC 217181 Query 66568 GTCGATGGGGGATCCTCGTGCCCGTATATCGTGAACATTCAGACCAATACCACCGGCCGT 66627 | ||| ||||| | | || || | ||| || || ||||| || ||||| || || Sbjct 217180 AGCAATGTAAGATCCAGTTCCACGAATGTTGTGGACGTTGAGACCGATTCCACCTGCAGT 217121 Query 66628 CTTCGAGATGGCAGCACA-ATC-GGCCACTGTCCGGAATATGCCGTCAATGGAGTCACCC 66685 ||| ||||| ||||| || | | |||| | | || || || |||||||| || Sbjct 217120 CTTGGAGATCATGGCACACGTCTTGAGAGTGTC--GTAGATTCCTTCGATGGAGTCGTCC 217063 Query 66686 TTGATGGTCAGGAGGTAGCATGAACTAAGTTGGGGTTTGGGTGTGGCGGCCGAGAAGAGG 66745 || ||||| | | | | || ||| | ||| | | || || | || |||||| Sbjct 217062 TTCATGGTGACCAAGAAACAGGAAGACATTTGAGAATGAGGAGTTCCAGCGTTGAAGAGA 217003 Query 66746 GTGGGTGTAGCGTGCGT-AAAGTAATGGCGAGACATGTAATTGTACGTCTCGATGACAGC 66804 || || | |||||| || ||||| | || |||||| || || ||||||||| | Sbjct 217002 GTTGGAGAAGCGTGGGTGAAAGTCTTCTCG-GACATGAGGTTATAAGTCTCGATGGCCTT 216944 Query 66805 ATCAATGTTTTCGCCATGAATCCCGAGTGC-ACATCGCATCAGGAGGTATTGAGGCCGTT 66863 || | || ||||| || || | || ||| ||||| || | || |||||| |||| Sbjct 216943 TTCGACGTCGGTTCCATGGATTCCAATGGCGACA-CGCATGAGCATGTGTTGAGGACGTT 216885 Query 66864 CGACCAGCCGATCC-TTGATATGCATTAAGTAGGAGCGTTCCAGGGTCTTGATACCAAAG 66922 || | | || ||| ||||| | | | ||| || | || || ||||||| ||| ||| Sbjct 216884 CGGCGA-CCTTTCCATTGATTCGTAGAAGGTAAGATCTCTCAAGAGTCTTGAAACCGAAG 216826 >seq23 Length=563827 Score = 138 bits (152), Expect = 9e-28 Identities = 172/234 (74%), Gaps = 5/234 (2%) Strand=Plus/Minus Query 61087 ATTTGGCGCATGTACAAAAAGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGTCGATTTG 61146 || |||| |||||||| || || ||||| || |||||||| | |||||| | ||| | Sbjct 140211 ATCTGGCAAATGTACAAGAAAGCAGAAGCATCATTCTGGACTGCAGAGGAGATTGATCTC 140152 Query 61147 TCCAAAGACATGAATGACTGGGAGC----GTTTATCGAGCGGTGAACAACATTTCATTAA 61202 |||||||||||| | || ||||| ||| | || | ||||| || || || Sbjct 140151 TCCAAAGACATGCACGATTGGGACAACAAGTTGAATGA-CAATGAACGTCACTTTATCTC 140093 Query 61203 ACATGTGTTGGCGTTCTTTGCCGCTTCGGACGGTATCGTCAATGAGAATTTATTGGAACG 61262 || || ||||| ||||||||||||||||| || ||||||||||| || | |||||||| Sbjct 140092 TCACGTCTTGGCCTTCTTTGCCGCTTCGGATGGAATCGTCAATGAAAACCTTTTGGAACG 140033 Query 61263 TTTCGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGAT 61316 |||| || || |||| | ||||| ||||||||||| || |||||||| Sbjct 140032 TTTCAGTGGTGAAGTTCAAGCTGCAGAGGCTCGTTGTTTCTATGGGTTCCAGAT 139979 >seq12 Length=1121745 Score = 87.8 bits (96), Expect = 1e-12 Identities = 81/103 (79%), Gaps = 0/103 (0%) Strand=Plus/Minus Query 9146 TTTGGGCCCCATTTACGGTTTCCAGTGGCGACATTTCGGTGCTCGGTACATCGATTGTCA 9205 ||| || || |||| |||||||| ||| |||||||||||||| || |||||| | Sbjct 391659 TTTAGGTCCAGTTTATGGTTTCCAATGGAGACATTTCGGTGCTAAATATGAGGATTGTGA 391600 Query 9206 TACGGACTATACGGGCCAAGGTGTGGATCAGTTGGCGCAATGT 9248 |||||| |||| ||| |||| |||||||| |||||| ||||| Sbjct 391599 TACGGATTATAGTGGCAAAGGAGTGGATCAATTGGCGGAATGT 391557 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397567694742320