Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Golubevia_20pallescens_20[genbank_20GCA_5F001599655.1_202016-03-01] 63 sequences; 27,756,302 total letters Query= NC_032108.1 Length=589068 Score E Sequences producing significant alignments: (Bits) Value seq14 93.3 2e-13 seq2 89.7 2e-12 >seq14 Length=903556 Score = 93.3 bits (102), Expect = 2e-13 Identities = 107/144 (74%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 364424 CCAATAGTCATACGAGAGGGAATGGAGAGAGGGTTGATGATGATGTCAGGCACCATGCCG 364483 ||||| ||||||||||| ||||| | |||| ||||| |||||||| || || || Sbjct 719879 CCAATCGTCATACGAGATGGAATAGCATGAGGATTGATAATGATGTCTGGTGTGATACCT 719820 Query 364484 TCAGCGGTAAAGGGCATATCTTCGGGAGGAACGATGAGACCAATGGTTCCCTTTTGCGCA 364543 || | || || ||||||||||| | | | ||| ||||| ||||||||||| || Sbjct 719819 TCGGAAGTGAATGGCATATCTTCTTGTCTATAGGTGATTCCAATAGTTCCCTTTTGTCCA 719760 Query 364544 TAGCGAGAAGCAAACTTGTCGCCA 364567 | |||||||| |||||||| ||| Sbjct 719759 TGACGAGAAGCGAACTTGTCTCCA 719736 >seq2 Length=1692430 Score = 89.7 bits (98), Expect = 2e-12 Identities = 208/311 (67%), Gaps = 2/311 (1%) Strand=Plus/Plus Query 12734 ACATCGTAAAAGAAAACTTTCATGCCTAGACACTCTGCTAGGACAGAGACCTGAGAACCA 12793 ||||| || ||| ||||||||| || | | ||||||||||| || | |||| ||| Sbjct 112259 ACATCATAGTAGAGAACTTTCATTCCCATTGATTCTGCTAGGACTGAAAGTTGAGCTCCA 112318 Query 12794 ATGTTACCATAACCTACTATACCTAGGGTCTTTCCTCTAACTTCACGGCAACCTTGAGAA 12853 || | ||||| |||||||| |||| ||| ||||||| ||||||| || |||| ||| Sbjct 112319 ATATGTCCATATCCTACTATTCCTAAGGTTTTTCCTCGAACTTCATAACATCCTTTGGAA 112378 Query 12854 GTCTTGTTCCAAATGCCTTGGTGTAGTTCTTTGTTTCTATCTCCAACCTGACGAGAAAGA 12913 |||||||| ||| | ||| | |||||| | | || ||||| | Sbjct 112379 ACTTTGTTCCATTCTCCTAATCTCATTTCCATTGATCTATCGGCTAATTGTCGAGATAAT 112438 Query 12914 TTAATTAGTTGTCCTATGATGAGCTCTGCCACGCTTCTAG-TGTTGCAAAAGGGAGAATT 12972 ||| || ||| || | | || || || ||| | |||||||| |||||||| Sbjct 112439 GCAATGGTTTCTCCGATTACTAATTCGGCTACTGATCTTGAATTTGCAAAA-GGAGAATT 112497 Query 12973 AAAGACTGCAATGCCTAGTTTGGTAGCCATGTCTAGATTAACCTGATCGTAACCAATGCA 13032 |||||||| | ||| ||||| || |||||| || |||| | || || || Sbjct 112498 GAAGACTGCTACTCCTGCTTTGGCTGCTGCTACTAGATCGACTTGATTGGTTCCGATACA 112557 Query 13033 GAAGCATCCTA 13043 ||| ||||||| Sbjct 112558 GAAACATCCTA 112568 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1884884878543259