Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Grammothele_20lineata_20[genbank_20GCA_5F002150815.2_202017-06-20] 1,276 sequences; 42,856,078 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq993 214 1e-50 seq506 134 1e-26 >seq993 Length=568693 Score = 214 bits (236), Expect = 1e-50 Identities = 392/570 (69%), Gaps = 11/570 (2%) Strand=Plus/Plus Query 61087 ATTTGGCGCATGTACAAAAAGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGTCGATTTG 61146 || |||| |||||||| || || || || ||||||||||||| |||||| | || | Sbjct 488980 ATCTGGCAAATGTACAAGAAAGCAGAGGCGTCCTTCTGGACGGCAGAGGAGATGGACCTT 489039 Query 61147 TCCAAAGACATGAATGACTGGGA-----GCGTTTATCGAGCGGTGAACAACATTTCATTA 61201 ||||| || | |||||||| | || | || || || || | ||||||||| Sbjct 489040 TCCAAGGATCTCCATGACTGGAACAACCGCCTCAAT-GA-CGACGAGCGTCATTTCATTT 489097 Query 61202 AACATGTGTTGGCGTTCTTTGCCGCTTCGGACGGTATCGTCAATGAGAATTTATTGGAAC 61261 || || | || |||||||| || || |||||||| ||||| |||||| | | |||| Sbjct 489098 CCCACGTCCTTGCCTTCTTTGCAGCATCCGACGGTATTGTCAACGAGAATCTCGTAGAAC 489157 Query 61262 GTTTCGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCA 61321 | ||| | | || || || | | ||||||| || ||||||||||| ||||||||| | Sbjct 489158 GGTTCTCCAACGAAGTTCAGGCGGCGGAGGCTCGCTGTTTCTACGGTTTCCAGATTATGA 489217 Query 61322 TGGAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGGAGCGGG 61381 ||||||| | ||||| |||| |||| | | |||||||| || ||||||| ||| | Sbjct 489218 TGGAGAACATTCACTCCGAGACGTACTCTCTCCTCATCGACACCTACATCAAGGACCCCC 489277 Query 61382 CGGAACGTGAACGATTGTTCAATGCCATCGAGACGATACCGGCGGTGAAGCGGAAAGCGG 61441 | | || || | ||||| | ||||| || || || || | ||| ||| || | Sbjct 489278 AGCAGCGCGAGCACCTGTTCGACGCCATTGACACTATCCCCTGCATTAAGAAGAAGGCCG 489337 Query 61442 ATTGGGCCTTCAATTGGATCACCAGTACAACGGCT--ACATTTGGTGAACGATTGCTGGC 61499 ||||||| || ||||| | | |||| || | |||| || || | | || Sbjct 489338 ATTGGGCTCTCCGCTGGATTTC--GGACAAGAACTCCGCGTTTGCGGAGCGCCTCGTTGC 489395 Query 61500 ATTTGCGGTGGTCGAGGGTGTATTTTTCAGTGGATCGTTTGCCGCAATCTTTTGGTTGAA 61559 ||||| | ||||||||| | || ||| || || || ||| | ||||| ||| | || Sbjct 489396 TTTTGCAGCCGTCGAGGGTATCTTCTTCTCCGGCTCCTTCGCCTCTATCTTCTGGCTCAA 489455 Query 61560 GAAACGTGGACTTATGCCCGGTCTGACCTTCAGCAATGAGTTGATATCACGCGACGAGGG 61619 ||| ||||| || |||||||| || || || || || | || || ||||| ||||| Sbjct 489456 GAAGCGTGGTCTCATGCCCGGCCTCACGTTTTCGAACGAACTCATCTCCCGCGATGAGGG 489515 Query 61620 CATGCATTGTGATTTTGCTGTTTTGCTATT 61649 ||||||| || || ||| ||||| || Sbjct 489516 CATGCATACCGACTTCGCTTGCTTGCTCTT 489545 Score = 145 bits (160), Expect = 6e-30 Identities = 305/450 (68%), Gaps = 6/450 (1%) Strand=Plus/Minus Query 61191 ACATTTCATTAAACATGTGTTGGCGTTCTTTGCCGCTTCGGACGGTATCGTCAATGAGAA 61250 ||||||| | | ||||| | || ||||| |||||||||||||| || ||||| ||||| Sbjct 487509 ACATTTCCTCTCATATGTGCTTGCCTTCTTCGCCGCTTCGGACGGCATTGTCAACGAGAA 487450 Query 61251 TTTATTGGAACGTTTCGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTT 61310 | | | || || ||| | | ||||| || | | | ||||| || || ||||||||||| Sbjct 487449 TCTCGTCGAGCGGTTCTCCAATGAGGTCCAGGCGGCTGAGGCCCGCTGCTTCTACGGCTT 487390 Query 61311 CCAGATTGCCATGGAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACAT 61370 |||||| || || ||||| || || |||| |||| | |||||||| || ||||| Sbjct 487389 CCAGATCATGATTGAAAATGTGCATTCAGAGACGTACTCCCTCCTCATCGACACATACAT 487330 Query 61371 CAGGGAGCGGGCGGAACGTGAACGAT--TGTTCAATGCCATCGAGACGATACCGGCGGTG 61428 || ||| | | || | | || | | ||| | || || ||||| ||||| | Sbjct 487329 CAAGGACCCTGTCGA--GCGCACTTTCCTCTTCGACGCTATAGAGACAATACCTTGCATC 487272 Query 61429 AAGCGGAAAGCGGATTGGGCCTTCAATTGGATCACCAGTACA-ACGGCTACATTTGGTGA 61487 ||| ||| || || ||||| || ||||| | ||| | | || ||| || Sbjct 487271 AAGAAGAAGGCTGACTGGGCGTTACGCTGGAT-AGCAGACGAGAATTCTGTCTTTTCGGA 487213 Query 61488 ACGATTGCTGGCATTTGCGGTGGTCGAGGGTGTATTTTTCAGTGGATCGTTTGCCGCAAT 61547 | | | ||||| || | |||||||| | || ||| || || || ||| | || Sbjct 487212 GAGGCTAGTTGCATTCGCAGCCGTCGAGGGAATTTTCTTCTCCGGCTCCTTCGCCTCTAT 487153 Query 61548 CTTTTGGTTGAAGAAACGTGGACTTATGCCCGGTCTGACCTTCAGCAATGAGTTGATATC 61607 ||| ||| | ||||| ||||| || |||||||| || || || || || | || || Sbjct 487152 CTTCTGGCTCAAGAAGCGTGGTCTCATGCCCGGCCTCACGTTTTCGAACGAACTCATCTC 487093 Query 61608 ACGCGACGAGGGCATGCATTGTGATTTTGC 61637 ||||| |||||||||||| || ||||| Sbjct 487092 CCGCGATGAGGGCATGCATACCGACTTTGC 487063 >seq506 Length=319592 Score = 134 bits (148), Expect = 1e-26 Identities = 408/631 (65%), Gaps = 56/631 (9%) Strand=Plus/Minus Query 66344 AATAGATCAGGTATCCAGAGGGCGTAGAAGAGATCGCGTGCTCGTTGCTCCTCAATGCCG 66403 || ||||| || ||||| | || |||||||| || || || || |||||| | || Sbjct 218921 AAAAGATCCGGAATCCACAATGCATAGAAGAGGTCACGAGCGCGAACCTCCTCTTTACCA 218862 Query 66404 TGATTTTTGCGCAAGTCGAGGAACTCAAAGATGTCGGCATGCCATGGTTCCAGGTAGATG 66463 || || || || | ||||||||||| |||| |||||||||||| || || ||||||||| Sbjct 218861 TGGTTCTTACGAAGATCGAGGAACTCGAAGACGTCGGCATGCCAAGGCTCTAGGTAGATG 218802 Query 66464 GCGAACGAGCCCATACGTTTGCCGCCACCTTGGTCGACGTAGCGAGCGACATTG--TTGA 66521 ||||| | || || ||| |||||| ||||||||||| || || | | | | | Sbjct 218801 GCGAAGGCACCGGGGCGCTTGTTGCCACCCTGGTCGACGTAACGGGC--CGTCGAATCGT 218744 Query 66522 AGACACGCAACATCGGTACGAGCCCGTTAGATTTGCCATTGGTG-CCGT----------C 66570 ||||||| | ||| || |||| ||||| || | |||||| ||| ||| | Sbjct 218743 AGACACGGAGCATAGGAACGATGCCGTTCGAATAGCCATTAGTGCCCGAGATATACGAAC 218684 Query 66571 GATGG-----------------GGGATCCTC-------------------GT-GCCCGTA 66593 || | | |||| | || ||||| | Sbjct 218683 TATAGAAATGTTAGAATATTTTGTGATCGTAAGACGAGACAACCTACCCAGTAGCCCGGA 218624 Query 66594 TATCGTGAACATTCAGACCAATACCACCGGCCGTCTTCGAGATGGCAGCACAATCGGCCA 66653 | | ||| | || | |||||||||||| || ||||| ||| ||| || || | Sbjct 218623 TGTTGTGGATGTTGATACCAATACCACCCGCGGTCTTACTGATCATAGCGCAGTCCTTGA 218564 Query 66654 CTGTCCGGAATATGCCGTCAATGGAGTCACCCTTGATGGTCAGGAGGTAGCATGAACTAA 66713 ||| | | ||||| || || ||||| |||| || | || | || || || | Sbjct 218563 GGGTCGAGTAGATGCCCTCGATAGAGTCGTCCTTCATACAGACAAGAAAACACGAGCTCA 218504 Query 66714 GTTG-GGGTTTGGGTGTGGCGGCCGAGAAGAGGGTGGGTGTAGCGTGCGTAAAGTAATGG 66772 ||| ||||||||| ||| | || ||| || || |||| |||||||| ||||| | Sbjct 218503 TTTGAGGGTTTGGG-GTGCCAGCGTTGAAAAGCGTTGGTGAGGCGTGCGTGAAGTAGCGC 218445 Query 66773 CGAGACATGTAATTGTACGTCTCGATGACAGCATCAATGTTTTCGCCATGAATCCCGAGT 66832 |||||| || |||||||| | ||| || |||| |||||||| |||| Sbjct 218444 TCAGACATCAGGTTATACGTCTCAAGAACATGGTCGATGTCGGATCCATGAATACCGACA 218385 Query 66833 GC-ACATCGCATCAGGAGGTATTGAGGCCGTTCGACCAGCCGATCCTTGATATGCATTAA 66891 || ||| ||||| || || | || ||||| || ||| || | ||||| | || | Sbjct 218384 GCGACA-CGCATGAGAAGATGCTGTGGCCGCTCAGCCACGCGTCCGTTGATCTTCAAGAG 218326 Query 66892 GTAGGAGCGTTCCAGGGTCTTGATACCAAAG 66922 |||||||||||| |||||||||| |||||| Sbjct 218325 GTAGGAGCGTTCAAGGGTCTTGAAGCCAAAG 218295 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397561817320640