Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heterobasidion_20annosum_20[genbank_20GCA_5F001457895.1_202015-11- 03] 14 sequences; 27,696,343 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq3 205 7e-48 seq5 129 5e-25 >seq3 Length=3048375 Score = 205 bits (226), Expect = 7e-48 Identities = 376/545 (69%), Gaps = 7/545 (1%) Strand=Plus/Minus Query 61087 ATTTGGCGCATGTACAAAAAGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGTCGATTTG 61146 || |||| ||||||||||| || ||||| || |||||||| | || ||| | || || Sbjct 1875488 ATCTGGCAAATGTACAAAAAAGCTGAAGCGTCTTTCTGGACTGCCGAAGAGATGGACCTG 1875429 Query 61147 TCCAAAGACATGAATGACTGGGAG---CGT-TTATCGAGCGGTGAACAACATTTCATTAA 61202 || ||||| | | |||||| | || ||| ||| | ||| | || || | Sbjct 1875428 TCAAAAGATCTCCACGACTGGAATAACCGCCTTAACGA-CAATGAGCGTCACTTTGTCTC 1875370 Query 61203 ACATGTGTTGGCGTTCTTTGCCGCTTCGGACGGTATCGTCAATGAGAATTTATTGGAACG 61262 ||||| | ||||| |||||||| || || || |||||||| ||||| | | || || Sbjct 1875369 GCATGTCCTCGCGTTTTTTGCCGCCTCTGATGGCATCGTCAACGAGAACCTTGTTGAGCG 1875310 Query 61263 TTTCGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCAT 61322 ||| || | ||||| || | | | ||||||||||| |||||||| ||||| ||| || Sbjct 1875309 CTTCTCGAACGAGGTTCAGGCGGCTGAGGCGCGTTGCTTCTACGGGTTCCAAATTATGAT 1875250 Query 61323 GGAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGGAGCGGGC 61382 ||| ||| ||||| |||| ||| |||| |||||||| ||||||| ||| | Sbjct 1875249 GGAAAATATCCACAGCGAGACCTACTCCCTTCTTATCGATACTTACATCAAGGACCCTAA 1875190 Query 61383 GGAACGTGAACGATTGTTCAATGCCATCGAGACGATACCGGCGGTGAAGCGGAAAGCGGA 61442 | |||| || | ||| |||| | ||||| || || || || |||| ||||| Sbjct 1875189 GCAACGCGAGTACCTTTTCGATGCTGTTGAGACCATTCCTTGTGTCAAAAGGAAGGCGGA 1875130 Query 61443 TTGGGCCTTCAATTGGATCACCAGTACAACG-GCTACATTTGGTGAACGATTGCTGGCAT 61501 ||||| | |||||| || | | || | ||||||| ||| ||||| | || | Sbjct 1875129 CTGGGCACTACGCTGGATCTCC-GATCGTCGCTCCACATTTGCTGAGCGATTAGTCGCCT 1875071 Query 61502 TTGCGGTGGTCGAGGGTGTATTTTTCAGTGGATCGTTTGCCGCAATCTTTTGGTTGAAGA 61561 | || | || ||||| | || ||| || || || ||| ||||||| |||||||||| Sbjct 1875070 TCGCCGCTGTGGAGGGCATTTTCTTCTCCGGTTCTTTCGCCTCAATCTTCTGGTTGAAGA 1875011 Query 61562 AACGTGGACTTATGCCCGGTCTGACCTTCAGCAATGAGTTGATATCACGCGACGAGGGCA 61621 | ||||| || ||||| || || |||||| |||||| | || || |||||||| | Sbjct 1875010 AGCGTGGCCTCATGCCTGGACTCACCTTCTCCAATGAACTCATCAGTCGTGACGAGGGAA 1874951 Query 61622 TGCAT 61626 ||||| Sbjct 1874950 TGCAT 1874946 Score = 199 bits (220), Expect = 3e-46 Identities = 386/560 (69%), Gaps = 15/560 (3%) Strand=Plus/Plus Query 61087 ATTTGGCGCATGTACAAAAAGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGTCGATTTG 61146 ||||||| |||||||| || || | ||||| || |||||| || ||| ||||| || Sbjct 1876707 ATTTGGCAGATGTACAAGAAAGCCCAGGCTTCGTTTTGGACGTCCGAAGAGATCGATATG 1876766 Query 61147 TCCAAAGACATGAATGACTGGGAGCGTTTATC-GAGCGGT---GAACAACATTTCATTAA 61202 |||||||| || |||||| | || | | | || | | |||| |||||||| Sbjct 1876767 TCCAAAGATATCTTCGACTGGAA-CGATAACCTGAATGATAACGAACGCCATTTCATATC 1876825 Query 61203 ACATGTGTTGGCGTTCTTTGCCGCTTCGGACGGTATCGTCAATGAGAATTTATTGGAACG 61262 | |||| ||||||| ||||||||||| |||||||| ||||| |||||| | |||| || Sbjct 1876826 ATATGTCCTGGCGTTTTTTGCCGCTTCCGACGGTATTGTCAACGAGAATCTGGTGGAGCG 1876885 Query 61263 --TTTCGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCC 61320 ||||| || || || |||| | || | || ||||| || || || || || Sbjct 1876886 GTTTTCGAGC--GAAGTACAAGCCGCTGAAGTCCGCTGTTTTTATGGATTTCAAATCATG 1876943 Query 61321 ATGGAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGGAGCGG 61380 ||||| || | |||||||| | ||| | | ||||||||||| |||||| || Sbjct 1876944 ATGGAAAACATTCACTCGGAAACATACTCTCTCCTCATCGATACCTACATCCCTGACTCT 1877003 Query 61381 GCGGAACGTGAACGATTGTTCAATGCCATCGAGACGATACCGGCGGTGAAGCGGAAAGCG 61440 | | |||| | |||||| | |||||||| ||||| || |||| ||| | Sbjct 1877004 CAGCAGCGTGGCTTCCTCTTCAATTCGATCGAGACTATACCATGCGTCAAGCAGAAGACC 1877063 Query 61441 GATTGGGCCTTCAATTGGATCACCAGTACAACGG-CTACATTTGGTGAACGA--TTGCTG 61497 || |||||| ||| |||||| | | |||||| | || |||| |||| ||| || Sbjct 1877064 GAGTGGGCCCTCAGGTGGATC-TCTGACCAACGGTCGACGTTTG--CCACGAGGTTGGTG 1877120 Query 61498 GCATTTGCGGTGGTCGAGGGTGTATTTTTCAGTGGATCGTTTGCCGCAATCTTTTGGTTG 61557 || || |||| ||| || || | || ||| ||||| ||||| ||||||| ||| || Sbjct 1877121 GCGTTCGCGGCGGTAGAAGGGATCTTCTTCTCCGGATCTTTTGCTTCAATCTTCTGGCTG 1877180 Query 61558 AAGAAACGTGGACTTATGCCCGGTCTGACCTTCAGCAATGAGTTGATATCACGCGACGAG 61617 |||||||| || || ||||| ||| | ||||| || || |||| || ||||| Sbjct 1877181 AAGAAACGAGGTCTCATGCCTGGTTTAACCTTTTCTAACGAACTGATTAGTCGGGACGAA 1877240 Query 61618 GGCATGCATTGTGATTTTGC 61637 || ||||| |||||||| Sbjct 1877241 GGGATGCACACAGATTTTGC 1877260 >seq5 Length=2295515 Score = 129 bits (142), Expect = 5e-25 Identities = 167/231 (72%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 66344 AATAGATCAGGTATCCAGAGGGCGTAGAAGAGATCGCGTGCTCGTTGCTCCTCAATGCCG 66403 || ||||| || ||||| || || |||||||| |||||||| | ||||| ||||| Sbjct 537501 AAAAGATCGGGGATCCAAAGTGCATAGAAGAGGTCGCGTGCACAAACTTCCTCCTTGCCG 537442 Query 66404 TGATTTTTGCGCAAGTCGAGGAACTCAAAGATGTCGGCATGCCATGGTTCCAGGTAGATG 66463 || ||||| || | ||||| ||||||| | | |||||||||||||| || | ||||| Sbjct 537441 TGGTTTTTACGGAGGTCGACGAACTCATATGTATCGGCATGCCATGGCTCAATATAGATT 537382 Query 66464 GCGAACGAGCCCATACGTTTGCCGCCACCTTGGTCGACGTAGCGAGCGACATTGTTGAAG 66523 ||||| | ||||| ||||| || ||||| ||||| |||||||| | || | | Sbjct 537381 GCGAAAGCGCCCAGGAGTTTGTTACCGCCTTGATCGACATAGCGAGCAGTCTCGTCGTAC 537322 Query 66524 ACACGCAACATCGGTACGAGCCCGTTAGATTTGCCATTGGTGCCGTCGATG 66574 | || | ||| || || | || ||||| | |||||||| ||| | ||| Sbjct 537321 GCGCGGAGCATGGGAACAATACCATTAGAATATCCATTGGTACCGGCAATG 537271 Score = 123 bits (136), Expect = 2e-23 Identities = 166/231 (72%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 66344 AATAGATCAGGTATCCAGAGGGCGTAGAAGAGATCGCGTGCTCGTTGCTCCTCAATGCCG 66403 || ||||| || |||||||| || |||||||| |||||||| || ||||| ||||| Sbjct 539415 AAAAGATCGGGGATCCAGAGCGCATAGAAGAGGTCGCGTGCACGGACTTCCTCCTTGCCG 539356 Query 66404 TGATTTTTGCGCAAGTCGAGGAACTCAAAGATGTCGGCATGCCATGGTTCCAGGTAGATG 66463 |||||||| || | ||||| ||| || |||| ||||| |||||||| || || ||||| Sbjct 539355 TGATTTTTACGGAGGTCGATGAATTCGTAGATATCGGCGTGCCATGGCTCAAGATAGATT 539296 Query 66464 GCGAACGAGCCCATACGTTTGCCGCCACCTTGGTCGACGTAGCGAGCGACATTGTTGAAG 66523 || || | ||| || ||| || ||||| ||||| |||||||| || | | Sbjct 539295 GCAAAAGCACCCGGGCGCTTGTTACCGCCTTGATCGACATAGCGAGCAGTCGCGTCGTAT 539236 Query 66524 ACACGCAACATCGGTACGAGCCCGTTAGATTTGCCATTGGTGCCGTCGATG 66574 | || | ||| || || | ||||| || | |||||||| || ||||| Sbjct 539235 GCGCGGAGCATGGGAACAATACCGTTGGAGTATCCATTGGTACCAGCGATG 539185 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397567932164960