Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heterobasidion_20annosum_20[genbank_20GCA_5F001457955.1_202015-11- 03] 14 sequences; 27,988,318 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq3 205 7e-48 seq5 123 2e-23 >seq3 Length=3164952 Score = 205 bits (226), Expect = 7e-48 Identities = 376/545 (69%), Gaps = 7/545 (1%) Strand=Plus/Minus Query 61087 ATTTGGCGCATGTACAAAAAGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGTCGATTTG 61146 || |||| ||||||||||| || ||||| || |||||||| | || ||| | || || Sbjct 1890712 ATCTGGCAAATGTACAAAAAAGCTGAAGCGTCTTTCTGGACTGCCGAAGAGATGGACCTG 1890653 Query 61147 TCCAAAGACATGAATGACTGGGAG---CGT-TTATCGAGCGGTGAACAACATTTCATTAA 61202 || ||||| | | |||||| | || ||| ||| | ||| | || || | Sbjct 1890652 TCAAAAGATCTCCACGACTGGAATAACCGCCTTAACGA-CAATGAGCGTCACTTTGTCTC 1890594 Query 61203 ACATGTGTTGGCGTTCTTTGCCGCTTCGGACGGTATCGTCAATGAGAATTTATTGGAACG 61262 ||||| | ||||| |||||||| || || || |||||||| ||||| | | || || Sbjct 1890593 GCATGTCCTCGCGTTTTTTGCCGCCTCTGATGGCATCGTCAACGAGAACCTTGTTGAGCG 1890534 Query 61263 TTTCGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCAT 61322 ||| || | ||||| || | | | ||||||||||| |||||||| ||||| ||| || Sbjct 1890533 CTTCTCGAACGAGGTTCAGGCGGCTGAGGCGCGTTGCTTCTACGGGTTCCAAATTATGAT 1890474 Query 61323 GGAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGGAGCGGGC 61382 ||| ||| ||||| |||| ||| |||| |||||||| ||||||| ||| | Sbjct 1890473 GGAAAATATCCACAGCGAGACCTACTCCCTTCTTATCGATACTTACATCAAGGACCCTAA 1890414 Query 61383 GGAACGTGAACGATTGTTCAATGCCATCGAGACGATACCGGCGGTGAAGCGGAAAGCGGA 61442 | |||| || | ||| |||| | ||||| || || || || |||| ||||| Sbjct 1890413 GCAACGCGAGTACCTTTTCGATGCTGTTGAGACCATTCCCTGTGTCAAAAGGAAGGCGGA 1890354 Query 61443 TTGGGCCTTCAATTGGATCACCAGTACAACG-GCTACATTTGGTGAACGATTGCTGGCAT 61501 ||||| | |||||| || | | || | ||||||| ||| ||||| | || | Sbjct 1890353 CTGGGCACTACGCTGGATCTCC-GATCGTCGCTCCACATTTGCTGAGCGATTAGTCGCCT 1890295 Query 61502 TTGCGGTGGTCGAGGGTGTATTTTTCAGTGGATCGTTTGCCGCAATCTTTTGGTTGAAGA 61561 | || | || ||||| | || ||| || || || ||| ||||||| |||||||||| Sbjct 1890294 TCGCCGCTGTGGAGGGCATTTTCTTCTCCGGTTCTTTCGCCTCAATCTTCTGGTTGAAGA 1890235 Query 61562 AACGTGGACTTATGCCCGGTCTGACCTTCAGCAATGAGTTGATATCACGCGACGAGGGCA 61621 | ||||| || ||||| || || |||||| |||||| | || || |||||||| | Sbjct 1890234 AGCGTGGCCTCATGCCTGGACTCACCTTCTCCAATGAACTCATCAGTCGTGACGAGGGAA 1890175 Query 61622 TGCAT 61626 ||||| Sbjct 1890174 TGCAT 1890170 Score = 199 bits (220), Expect = 3e-46 Identities = 386/560 (69%), Gaps = 15/560 (3%) Strand=Plus/Plus Query 61087 ATTTGGCGCATGTACAAAAAGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGTCGATTTG 61146 ||||||| |||||||| || || | ||||| || |||||| || ||| ||||| || Sbjct 1891922 ATTTGGCAGATGTACAAGAAAGCCCAGGCTTCGTTTTGGACGTCCGAAGAGATCGATATG 1891981 Query 61147 TCCAAAGACATGAATGACTGGGAGCGTTTATC-GAGCGGT---GAACAACATTTCATTAA 61202 |||||||| || |||||| | || | | | || | |||| |||||||| Sbjct 1891982 TCCAAAGATATCTTCGACTGGAA-CGATAACCTGAATGACAACGAACGCCATTTCATATC 1892040 Query 61203 ACATGTGTTGGCGTTCTTTGCCGCTTCGGACGGTATCGTCAATGAGAATTTATTGGAACG 61262 | |||| |||| || ||||||||||| |||||||| ||||| |||||| | |||| || Sbjct 1892041 ATATGTCCTGGCATTTTTTGCCGCTTCCGACGGTATTGTCAACGAGAATCTGGTGGAGCG 1892100 Query 61263 --TTTCGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCC 61320 ||||| || || || |||| | || | || ||||| || || || || || Sbjct 1892101 GTTTTCGAGC--GAAGTACAAGCCGCTGAAGTCCGCTGTTTTTATGGATTTCAAATCATG 1892158 Query 61321 ATGGAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGGAGCGG 61380 ||||| || | |||||||| | ||| | | ||||||||||| |||||| || Sbjct 1892159 ATGGAAAACATTCACTCGGAAACATACTCTCTCCTCATCGATACCTACATCTCTGACTCT 1892218 Query 61381 GCGGAACGTGAACGATTGTTCAATGCCATCGAGACGATACCGGCGGTGAAGCGGAAAGCG 61440 | | |||| | | |||||| | |||||||| ||||| || |||| ||| | Sbjct 1892219 CAGCAGCGTGGCCTCCTCTTCAATTCGATCGAGACTATACCATGCGTCAAGCAGAAGACC 1892278 Query 61441 GATTGGGCCTTCAATTGGATCACCAGTACAACGG-CTACATTTGGTGAACGA--TTGCTG 61497 || |||||| ||| |||||| | | |||||| | || |||| |||| ||| || Sbjct 1892279 GAGTGGGCCCTCAGGTGGATC-TCTGACCAACGGTCGACGTTTG--CCACGAGGTTGGTG 1892335 Query 61498 GCATTTGCGGTGGTCGAGGGTGTATTTTTCAGTGGATCGTTTGCCGCAATCTTTTGGTTG 61557 || || |||| ||| || || | || ||| ||||| ||||| ||||||| ||| || Sbjct 1892336 GCGTTCGCGGCGGTAGAAGGGATCTTCTTCTCCGGATCTTTTGCTTCAATCTTCTGGCTG 1892395 Query 61558 AAGAAACGTGGACTTATGCCCGGTCTGACCTTCAGCAATGAGTTGATATCACGCGACGAG 61617 |||||||| || || ||||| ||| | ||||| || || |||| || ||||| Sbjct 1892396 AAGAAACGAGGTCTCATGCCTGGTTTAACCTTTTCTAACGAACTGATTAGTCGGGACGAA 1892455 Query 61618 GGCATGCATTGTGATTTTGC 61637 || |||||| |||||||| Sbjct 1892456 GGGATGCATACAGATTTTGC 1892475 >seq5 Length=2330625 Score = 123 bits (136), Expect = 2e-23 Identities = 166/231 (72%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 66344 AATAGATCAGGTATCCAGAGGGCGTAGAAGAGATCGCGTGCTCGTTGCTCCTCAATGCCG 66403 || ||||| || |||||||| || |||||||| |||||||| || ||||| ||||| Sbjct 512739 AAAAGATCGGGGATCCAGAGCGCATAGAAGAGGTCGCGTGCACGGACTTCCTCCTTGCCG 512680 Query 66404 TGATTTTTGCGCAAGTCGAGGAACTCAAAGATGTCGGCATGCCATGGTTCCAGGTAGATG 66463 |||||||| || | ||||| ||| || |||| ||||| |||||||| || || ||||| Sbjct 512679 TGATTTTTACGGAGGTCGATGAATTCGTAGATATCGGCGTGCCATGGCTCAAGATAGATT 512620 Query 66464 GCGAACGAGCCCATACGTTTGCCGCCACCTTGGTCGACGTAGCGAGCGACATTGTTGAAG 66523 || || | ||| || ||| || ||||| ||||| |||||||| || | | Sbjct 512619 GCAAAAGCACCCGGGCGCTTGTTACCGCCTTGATCGACATAGCGAGCAGTCGCGTCGTAT 512560 Query 66524 ACACGCAACATCGGTACGAGCCCGTTAGATTTGCCATTGGTGCCGTCGATG 66574 | || | ||| || || | ||||| || | |||||||| || ||||| Sbjct 512559 GCGCGGAGCATGGGAACAATACCGTTGGAGTATCCATTGGTACCAGCGATG 512509 Score = 120 bits (132), Expect = 2e-22 Identities = 165/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 66344 AATAGATCAGGTATCCAGAGGGCGTAGAAGAGATCGCGTGCTCGTTGCTCCTCAATGCCG 66403 || ||||| || ||||| || || |||||||| || ||||| || ||||| ||||| Sbjct 514780 AAAAGATCGGGGATCCAAAGTGCATAGAAGAGGTCACGTGCACGAACTTCCTCCTTGCCG 514721 Query 66404 TGATTTTTGCGCAAGTCGAGGAACTCAAAGATGTCGGCATGCCATGGTTCCAGGTAGATG 66463 || ||||| || | ||| | ||||||| | | |||||||||||||| || | ||||| Sbjct 514720 TGGTTTTTACGGAGGTCAACGAACTCATATGTATCGGCATGCCATGGCTCAATATAGATT 514661 Query 66464 GCGAACGAGCCCATACGTTTGCCGCCACCTTGGTCGACGTAGCGAGCGACATTGTTGAAG 66523 ||||| | |||| ||||| || ||||| ||||| |||||||| | ||| | Sbjct 514660 GCGAAAGCGCCCGGGAGTTTGTTACCGCCTTGATCGACATAGCGAGCAGTCTCATTGTAC 514601 Query 66524 ACACGCAACATCGGTACGAGCCCGTTAGATTTGCCATTGGTGCCGTCGATG 66574 | || | ||| || || | || ||||| | |||||||| ||| | ||| Sbjct 514600 GCGCGGAGCATGGGAACAATACCATTAGAATATCCATTGGTACCGGCAATG 514550 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397567932164960