Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heterobasidion_20annosum_20[genbank_20GCA_5F001457995.1_202015-11- 03] 14 sequences; 27,530,324 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq3 205 7e-48 seq5 129 5e-25 >seq3 Length=3024150 Score = 205 bits (226), Expect = 7e-48 Identities = 376/545 (69%), Gaps = 7/545 (1%) Strand=Plus/Minus Query 61087 ATTTGGCGCATGTACAAAAAGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGTCGATTTG 61146 || |||| ||||||||||| || ||||| || |||||||| | || ||| | || || Sbjct 1897175 ATCTGGCAAATGTACAAAAAAGCTGAAGCGTCTTTCTGGACTGCCGAAGAGATGGACCTG 1897116 Query 61147 TCCAAAGACATGAATGACTGGGAG---CGT-TTATCGAGCGGTGAACAACATTTCATTAA 61202 || ||||| | | |||||| | || ||| ||| | ||| | || || | Sbjct 1897115 TCAAAAGATCTCCACGACTGGAATAACCGCCTTAACGA-CAATGAGCGTCACTTTGTCTC 1897057 Query 61203 ACATGTGTTGGCGTTCTTTGCCGCTTCGGACGGTATCGTCAATGAGAATTTATTGGAACG 61262 ||||| | ||||| |||||||| || || || |||||||| ||||| | | || || Sbjct 1897056 GCATGTCCTCGCGTTTTTTGCCGCCTCTGATGGCATCGTCAACGAGAACCTTGTTGAGCG 1896997 Query 61263 TTTCGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCAT 61322 ||| || | ||||| || | | | ||||||||||| |||||||| ||||| ||| || Sbjct 1896996 CTTCTCGAACGAGGTTCAGGCGGCTGAGGCGCGTTGCTTCTACGGGTTCCAAATTATGAT 1896937 Query 61323 GGAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGGAGCGGGC 61382 ||| ||| ||||| |||| ||| |||| |||||||| ||||||| ||| | Sbjct 1896936 GGAAAATATCCACAGCGAGACCTACTCCCTTCTTATCGATACTTACATCAAGGACCCTAA 1896877 Query 61383 GGAACGTGAACGATTGTTCAATGCCATCGAGACGATACCGGCGGTGAAGCGGAAAGCGGA 61442 | |||| || | ||| |||| | ||||| || || || || |||| ||||| Sbjct 1896876 GCAACGCGAGTACCTTTTCGATGCTGTTGAGACCATTCCCTGTGTCAAAAGGAAGGCGGA 1896817 Query 61443 TTGGGCCTTCAATTGGATCACCAGTACAACG-GCTACATTTGGTGAACGATTGCTGGCAT 61501 ||||| | |||||| || | | || | ||||||| ||| ||||| | || | Sbjct 1896816 CTGGGCACTACGCTGGATCTCC-GATCGTCGCTCCACATTTGCTGAGCGATTAGTCGCCT 1896758 Query 61502 TTGCGGTGGTCGAGGGTGTATTTTTCAGTGGATCGTTTGCCGCAATCTTTTGGTTGAAGA 61561 | || | || ||||| | || ||| || || || ||| ||||||| |||||||||| Sbjct 1896757 TCGCCGCTGTGGAGGGCATTTTCTTCTCCGGTTCTTTCGCCTCAATCTTCTGGTTGAAGA 1896698 Query 61562 AACGTGGACTTATGCCCGGTCTGACCTTCAGCAATGAGTTGATATCACGCGACGAGGGCA 61621 | ||||| || ||||| || || |||||| |||||| | || || |||||||| | Sbjct 1896697 AGCGTGGCCTCATGCCTGGACTCACCTTCTCCAATGAACTCATCAGTCGTGACGAGGGAA 1896638 Query 61622 TGCAT 61626 ||||| Sbjct 1896637 TGCAT 1896633 Score = 194 bits (214), Expect = 1e-44 Identities = 385/560 (69%), Gaps = 15/560 (3%) Strand=Plus/Plus Query 61087 ATTTGGCGCATGTACAAAAAGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGTCGATTTG 61146 ||||||| |||||||| || || | ||||| || |||||| || ||| ||||| || Sbjct 1898385 ATTTGGCAGATGTACAAGAAAGCCCAGGCTTCGTTTTGGACGTCCGAAGAGATCGATATG 1898444 Query 61147 TCCAAAGACATGAATGACTGGGAGCGTTTATC-GAGCGGT---GAACAACATTTCATTAA 61202 |||||||| || |||||| | || | | | || | |||| |||||||| Sbjct 1898445 TCCAAAGATATCTTCGACTGGAA-CGATAACCTGAATGACAACGAACGCCATTTCATATC 1898503 Query 61203 ACATGTGTTGGCGTTCTTTGCCGCTTCGGACGGTATCGTCAATGAGAATTTATTGGAACG 61262 | |||| |||| || ||||||||||| |||||||| ||||| |||||| | |||| || Sbjct 1898504 ATATGTCCTGGCATTTTTTGCCGCTTCCGACGGTATTGTCAACGAGAATCTGGTGGAGCG 1898563 Query 61263 --TTTCGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCC 61320 ||||| || || || |||| | || | || ||||| || || || || || Sbjct 1898564 GTTTTCGAGC--GAAGTACAAGCCGCTGAAGTCCGCTGTTTTTATGGATTTCAAATCATG 1898621 Query 61321 ATGGAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGGAGCGG 61380 ||||| || | |||||||| | ||| | | ||||||||||| |||||| || Sbjct 1898622 ATGGAAAACATTCACTCGGAAACATACTCTCTCCTCATCGATACCTACATCTCTGACTCT 1898681 Query 61381 GCGGAACGTGAACGATTGTTCAATGCCATCGAGACGATACCGGCGGTGAAGCGGAAAGCG 61440 | | |||| | | |||||| | |||||||| ||||| || |||| ||| | Sbjct 1898682 CAGCAGCGTGGCCTCCTCTTCAATTCGATCGAGACTATACCATGCGTCAAGCAGAAGACC 1898741 Query 61441 GATTGGGCCTTCAATTGGATCACCAGTACAACGG-CTACATTTGGTGAACGA--TTGCTG 61497 || |||||| ||| |||||| | | |||||| | || |||| |||| ||| | Sbjct 1898742 GAGTGGGCCCTCAGGTGGATC-TCTGACCAACGGTCGACGTTTG--CCACGAGGTTGGTA 1898798 Query 61498 GCATTTGCGGTGGTCGAGGGTGTATTTTTCAGTGGATCGTTTGCCGCAATCTTTTGGTTG 61557 || || |||| ||| || || | || ||| ||||| ||||| ||||||| ||| || Sbjct 1898799 GCGTTCGCGGCGGTAGAAGGGATCTTCTTCTCCGGATCTTTTGCTTCAATCTTCTGGCTG 1898858 Query 61558 AAGAAACGTGGACTTATGCCCGGTCTGACCTTCAGCAATGAGTTGATATCACGCGACGAG 61617 |||||||| || || ||||| ||| | ||||| || || |||| || ||||| Sbjct 1898859 AAGAAACGAGGTCTCATGCCTGGTTTAACCTTTTCTAACGAACTGATTAGTCGGGACGAA 1898918 Query 61618 GGCATGCATTGTGATTTTGC 61637 || |||||| |||||||| Sbjct 1898919 GGGATGCATACAGATTTTGC 1898938 >seq5 Length=2324656 Score = 129 bits (142), Expect = 5e-25 Identities = 167/231 (72%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 66344 AATAGATCAGGTATCCAGAGGGCGTAGAAGAGATCGCGTGCTCGTTGCTCCTCAATGCCG 66403 || ||||| || ||||| || || |||||||| |||||||| || ||||| ||||| Sbjct 534728 AAAAGATCGGGGATCCAAAGTGCATAGAAGAGGTCGCGTGCACGAACTTCCTCCTTGCCG 534669 Query 66404 TGATTTTTGCGCAAGTCGAGGAACTCAAAGATGTCGGCATGCCATGGTTCCAGGTAGATG 66463 || ||||| || | ||||| ||||||| | | |||||||||||||| || | ||||| Sbjct 534668 TGGTTTTTACGGAGGTCGACGAACTCATATGTATCGGCATGCCATGGCTCAATATAGATT 534609 Query 66464 GCGAACGAGCCCATACGTTTGCCGCCACCTTGGTCGACGTAGCGAGCGACATTGTTGAAG 66523 ||||| | |||| ||||| || ||||| ||||| |||||||| | || | | Sbjct 534608 GCGAAAGCGCCCGGGAGTTTGTTACCGCCTTGATCGACATAGCGAGCAGTCTCGTCGTAC 534549 Query 66524 ACACGCAACATCGGTACGAGCCCGTTAGATTTGCCATTGGTGCCGTCGATG 66574 | || | ||| || || | || ||||| | |||||||| ||| | ||| Sbjct 534548 GCGCGGAGCATGGGAACAATACCATTAGAATATCCATTGGTACCGGCAATG 534498 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397567932164960