Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heterobasidion_20irregulare_20[genbank_20GCA_5F001457935.1_202015- 11-03] 14 sequences; 26,374,808 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq3 192 5e-44 seq5 138 9e-28 >seq3 Length=2984533 Score = 192 bits (212), Expect = 5e-44 Identities = 373/545 (68%), Gaps = 7/545 (1%) Strand=Plus/Plus Query 61087 ATTTGGCGCATGTACAAAAAGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGTCGATTTG 61146 || |||| |||||||| || || ||||| || |||||||| | || || | || || Sbjct 1854592 ATCTGGCAAATGTACAAGAAAGCTGAAGCGTCTTTCTGGACCGCCGAAGAAATGGACCTG 1854651 Query 61147 TCCAAAGACATGAATGACTGGGAG---CGT-TTATCGAGCGGTGAACAACATTTCATTAA 61202 || ||||| | | |||||| | || ||| ||| | ||| | || || | Sbjct 1854652 TCAAAAGATCTCCACGACTGGAATAACCGCCTTAACGA-CAATGAGCGTCACTTTGTCTC 1854710 Query 61203 ACATGTGTTGGCGTTCTTTGCCGCTTCGGACGGTATCGTCAATGAGAATTTATTGGAACG 61262 ||||| | ||||| ||||| || || || ||||||||||| ||||| | | || || Sbjct 1854711 GCATGTCCTCGCGTTTTTTGCTGCCTCTGATGGTATCGTCAACGAGAACCTTGTTGAGCG 1854770 Query 61263 TTTCGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCAT 61322 ||| || | ||||| || | | | ||||||||||| |||||||| ||||| ||| || Sbjct 1854771 CTTCTCGAACGAGGTTCAGGCGGCTGAGGCGCGTTGCTTCTACGGGTTCCAAATTATGAT 1854830 Query 61323 GGAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGGAGCGGGC 61382 ||| ||| ||||| |||| ||| |||| |||||||| ||||||| ||| | Sbjct 1854831 GGAAAATATCCACAGCGAGACCTACTCCCTTCTTATCGATACTTACATCAAGGACCCTAA 1854890 Query 61383 GGAACGTGAACGATTGTTCAATGCCATCGAGACGATACCGGCGGTGAAGCGGAAAGCGGA 61442 | |||| || | || |||| | ||||| || || || || |||| ||||| Sbjct 1854891 GCAACGCGAGTACCTTTTTGATGCTGTTGAGACCATTCCCTGTGTCAAAAGGAAGGCGGA 1854950 Query 61443 TTGGGCCTTCAATTGGATCACCAGTACAACG-GCTACATTTGGTGAACGATTGCTGGCAT 61501 ||||| | |||||| || | | || | ||||||| ||| ||||| | || | Sbjct 1854951 CTGGGCACTACGCTGGATCTCC-GATCGTCGCTCCACATTTGCTGAGCGATTAGTCGCCT 1855009 Query 61502 TTGCGGTGGTCGAGGGTGTATTTTTCAGTGGATCGTTTGCCGCAATCTTTTGGTTGAAGA 61561 | || | || ||||| | || ||| || || || ||| ||||||| |||||||||| Sbjct 1855010 TCGCCGCTGTGGAGGGCATTTTCTTCTCCGGTTCTTTCGCCTCAATCTTCTGGTTGAAGA 1855069 Query 61562 AACGTGGACTTATGCCCGGTCTGACCTTCAGCAATGAGTTGATATCACGCGACGAGGGCA 61621 | ||||| || ||||| || || |||||| |||||| | || || |||||||| | Sbjct 1855070 AGCGTGGCCTCATGCCTGGACTCACCTTCTCCAATGAACTCATCAGTCGTGACGAGGGAA 1855129 Query 61622 TGCAT 61626 ||||| Sbjct 1855130 TGCAT 1855134 Score = 181 bits (200), Expect = 8e-41 Identities = 380/559 (68%), Gaps = 13/559 (2%) Strand=Plus/Minus Query 61087 ATTTGGCGCATGTACAAAAAGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGTCGATTTG 61146 ||||||| |||||||| || || | ||||| || |||||| || ||| ||||| || Sbjct 1853376 ATTTGGCAGATGTACAAGAAAGCCCAGGCTTCGTTTTGGACGTCCGAAGAGATCGATATG 1853317 Query 61147 TCCAAAGACATGAATGACTGGGAGCGTTTATCGAGCGGT---GAACAACATTTCATTAAA 61203 |||||||| || |||||| | | || | | |||| |||||||| | Sbjct 1853316 TCCAAAGATATCTTCGACTGGAATAATAACCTGAATGATAACGAACGCCATTTCATATCA 1853257 Query 61204 CATGTGTTGGCGTTCTTTGCCGCTTCGGACGGTATCGTCAATGAGAATTTATTGGAACG- 61262 |||| |||| || ||||||||||| |||||||| ||||| |||||| | |||| || Sbjct 1853256 TATGTCCTGGCATTTTTTGCCGCTTCCGACGGTATTGTCAACGAGAATCTGGTGGAGCGG 1853197 Query 61263 -TTTCGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCA 61321 ||||| || || || |||| | || | || ||||| || || || ||||| | Sbjct 1853196 TTTTCGAGC--GAAGTACAAGCCGCTGAAGTCCGCTGTTTTTATGGATTTCAGATCATGA 1853139 Query 61322 TGGAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGGAGCGGG 61381 |||| || | |||||||| | ||| | | ||||||||||| ||||| || Sbjct 1853138 TGGAAAACATTCACTCGGAAACATACTCTCTCCTCATCGATACCTACATTTCTGACTCTC 1853079 Query 61382 CGGAACGTGAACGATTGTTCAATGCCATCGAGACGATACCGGCGGTGAAGCGGAAAGCGG 61441 | | ||||| | |||||| | |||||||| ||||| || |||| ||| | | Sbjct 1853078 AGCAGCGTGACTTCCTCTTCAATTCGATCGAGACTATACCATGCGTCAAGCAGAAGACCG 1853019 Query 61442 ATTGGGCCTTCAATTGGATCACCAGTACAACG-GCTACATTTGGTGAACGA--TTGCTGG 61498 | |||||| ||| |||||| | | ||||| | || |||| |||| ||| ||| Sbjct 1853018 AGTGGGCCCTCAGGTGGATC-TCTGATCAACGATCGACGTTTG--CCACGAGGTTGGTGG 1852962 Query 61499 CATTTGCGGTGGTCGAGGGTGTATTTTTCAGTGGATCGTTTGCCGCAATCTTTTGGTTGA 61558 | || || | ||| || || | || ||| ||||| ||||| ||||||| ||| ||| Sbjct 1852961 CGTTCGCAGCGGTAGAAGGGATCTTCTTCTCCGGATCTTTTGCTTCAATCTTCTGGCTGA 1852902 Query 61559 AGAAACGTGGACTTATGCCCGGTCTGACCTTCAGCAATGAGTTGATATCACGCGACGAGG 61618 ||||||| || || ||||| ||| | ||||| || || |||| || ||||| | Sbjct 1852901 AGAAACGAGGTCTCATGCCTGGTTTAACCTTTTCTAACGAACTGATTAGTCGGGACGAAG 1852842 Query 61619 GCATGCATTGTGATTTTGC 61637 | ||||| |||||||| Sbjct 1852841 GGATGCACACAGATTTTGC 1852823 >seq5 Length=2172826 Score = 138 bits (152), Expect = 9e-28 Identities = 169/231 (73%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 66344 AATAGATCAGGTATCCAGAGGGCGTAGAAGAGATCGCGTGCTCGTTGCTCCTCAATGCCG 66403 || ||||| || |||||||| || |||||||| |||||||| || ||||| ||||| Sbjct 492068 AAAAGATCGGGGATCCAGAGTGCATAGAAGAGGTCGCGTGCACGGACTTCCTCCTTGCCG 492009 Query 66404 TGATTTTTGCGCAAGTCGAGGAACTCAAAGATGTCGGCATGCCATGGTTCCAGGTAGATG 66463 ||||||||||| | ||||| ||| || |||| ||||| |||||||| || |||||||| Sbjct 492008 TGATTTTTGCGGAGGTCGATGAATTCGTAGATATCGGCGTGCCATGGCTCAAGGTAGATT 491949 Query 66464 GCGAACGAGCCCATACGTTTGCCGCCACCTTGGTCGACGTAGCGAGCGACATTGTTGAAG 66523 || || | ||| || ||| || ||||||||||| |||||||| || | | Sbjct 491948 GCAAAAGCACCCGGGCGCTTGTTACCGCCTTGGTCGACATAGCGAGCAGTCGCGTCGTAC 491889 Query 66524 ACACGCAACATCGGTACGAGCCCGTTAGATTTGCCATTGGTGCCGTCGATG 66574 | || | ||| || || | ||||| || | |||||||| || ||||| Sbjct 491888 GCGCGGAGCATGGGAACAATACCGTTGGAGTATCCATTGGTACCAGCGATG 491838 Score = 93.3 bits (102), Expect = 3e-14 Identities = 222/336 (66%), Gaps = 0/336 (0%) Strand=Plus/Minus Query 66587 GCCCGTATATCGTGAACATTCAGACCAATACCACCGGCCGTCTTCGAGATGGCAGCACAA 66646 ||||| || | ||||| ||| || ||||| |||||||||||||| ||| |||||| Sbjct 491771 GCCCGAATGTTGTGAATATTGAGTCCAATGCCACCGGCCGTCTTGCTGATCATAGCACAG 491712 Query 66647 TCGGCCACTGTCCGGAATATGCCGTCAATGGAGTCACCCTTGATGGTCAGGAGGTAGCAT 66706 | || || | || || ||||||||||| | || ||| | ||| | || Sbjct 491711 TTCTTCAGAGTTTCATAGATTCCCTCAATGGAGTCTTCTTTCATGCAAACCAGGAAACAC 491652 Query 66707 GAACTAAGTTGGGGTTTGGGTGTGGCGGCCGAGAAGAGGGTGGGTGTAGCGTGCGTAAAG 66766 || || | ||| || |||||||| | || |||||| || |||| ||||| || ||| Sbjct 491651 GAGCTCAATTGAGGATTGGGTGTACCCGCGTTGAAGAGTGTTGGTGAGGCGTGAGTGAAG 491592 Query 66767 TAATGGCGAGACATGTAATTGTACGTCTCGATGACAGCATCAATGTTTTCGCCATGAATC 66826 ||| | |||||| ||||| || || || | ||| | | |||| ||||| Sbjct 491591 TAACGTTCAGACATTAGGTTGTAGGTTTCAATAGCGCGATCGACATCAGCGCCGTGAATA 491532 Query 66827 CCGAGTGCACATCGCATCAGGAGGTATTGAGGCCGTTCGACCAGCCGATCCTTGATATGC 66886 |||| || ||||| | | || || || ||||| | | || | ||||| | Sbjct 491531 CCGACAGCTACGCGCATGATCATGTGCTGTGGACGTTCTGCGACACGGCCATTGATCCGA 491472 Query 66887 ATTAAGTAGGAGCGTTCCAGGGTCTTGATACCAAAG 66922 | | ||| || || ||||| ||||||| ||||||| Sbjct 491471 AGAAGGTAAGAACGCTCCAGCGTCTTGAAACCAAAG 491436 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397567932164960