Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heterobasidion_20irregulare_20[genbank_20GCA_5F001458015.1_202015- 11-03] 14 sequences; 26,844,330 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq3 192 5e-44 seq5 132 4e-26 >seq3 Length=3023347 Score = 192 bits (212), Expect = 5e-44 Identities = 373/545 (68%), Gaps = 7/545 (1%) Strand=Plus/Plus Query 61087 ATTTGGCGCATGTACAAAAAGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGTCGATTTG 61146 || |||| |||||||| || || ||||| || |||||||| | || || | || || Sbjct 1888283 ATCTGGCAAATGTACAAGAAAGCTGAAGCGTCTTTCTGGACCGCCGAAGAAATGGACCTG 1888342 Query 61147 TCCAAAGACATGAATGACTGGGAG---CGT-TTATCGAGCGGTGAACAACATTTCATTAA 61202 || ||||| | | |||||| | || ||| ||| | ||| | || || | Sbjct 1888343 TCAAAAGATCTCCACGACTGGAATAACCGCCTTAACGA-CAATGAGCGTCACTTTGTCTC 1888401 Query 61203 ACATGTGTTGGCGTTCTTTGCCGCTTCGGACGGTATCGTCAATGAGAATTTATTGGAACG 61262 ||||| | ||||| ||||| || || || ||||||||||| ||||| | | || || Sbjct 1888402 GCATGTCCTCGCGTTTTTTGCTGCCTCTGATGGTATCGTCAACGAGAACCTTGTTGAGCG 1888461 Query 61263 TTTCGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCAT 61322 ||| || | ||||| || | | | ||||||||||| |||||||| ||||| ||| || Sbjct 1888462 CTTCTCGAACGAGGTTCAGGCGGCTGAGGCGCGTTGCTTCTACGGGTTCCAAATTATGAT 1888521 Query 61323 GGAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGGAGCGGGC 61382 ||| ||| ||||| |||| ||| |||| |||||||| ||||||| ||| | Sbjct 1888522 GGAAAATATCCACAGCGAGACCTACTCCCTTCTTATCGATACTTACATCAAGGACCCTAA 1888581 Query 61383 GGAACGTGAACGATTGTTCAATGCCATCGAGACGATACCGGCGGTGAAGCGGAAAGCGGA 61442 | |||| || | || |||| | ||||| || || || || |||| ||||| Sbjct 1888582 GCAACGCGAGTACCTTTTTGATGCTGTTGAGACCATTCCCTGTGTCAAAAGGAAGGCGGA 1888641 Query 61443 TTGGGCCTTCAATTGGATCACCAGTACAACG-GCTACATTTGGTGAACGATTGCTGGCAT 61501 ||||| | |||||| || | | || | ||||||| ||| ||||| | || | Sbjct 1888642 CTGGGCACTACGCTGGATCTCC-GATCGTCGCTCCACATTTGCTGAGCGATTAGTCGCCT 1888700 Query 61502 TTGCGGTGGTCGAGGGTGTATTTTTCAGTGGATCGTTTGCCGCAATCTTTTGGTTGAAGA 61561 | || | || ||||| | || ||| || || || ||| ||||||| |||||||||| Sbjct 1888701 TCGCCGCTGTGGAGGGCATTTTCTTCTCCGGTTCTTTCGCCTCAATCTTCTGGTTGAAGA 1888760 Query 61562 AACGTGGACTTATGCCCGGTCTGACCTTCAGCAATGAGTTGATATCACGCGACGAGGGCA 61621 | ||||| || ||||| || || |||||| |||||| | || || |||||||| | Sbjct 1888761 AGCGTGGCCTCATGCCTGGACTCACCTTCTCCAATGAACTCATCAGTCGTGACGAGGGAA 1888820 Query 61622 TGCAT 61626 ||||| Sbjct 1888821 TGCAT 1888825 Score = 190 bits (210), Expect = 2e-43 Identities = 384/560 (69%), Gaps = 15/560 (3%) Strand=Plus/Minus Query 61087 ATTTGGCGCATGTACAAAAAGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGTCGATTTG 61146 ||||||| |||||||| || || | ||||| || |||||| || ||| ||||| || Sbjct 1887067 ATTTGGCAGATGTACAAGAAAGCCCAGGCTTCGTTTTGGACGTCCGAAGAGATCGATATG 1887008 Query 61147 TCCAAAGACATGAATGACTGGGAGCGTTTATC-GAGCGGT---GAACAACATTTCATTAA 61202 |||||||| || |||||| | | | | | || | | |||| |||||||| Sbjct 1887007 TCCAAAGATATCTTCGACTGGAA-CAATAACCTGAATGATAACGAACGCCATTTCATATC 1886949 Query 61203 ACATGTGTTGGCGTTCTTTGCCGCTTCGGACGGTATCGTCAATGAGAATTTATTGGAACG 61262 | |||| |||| || ||||||||||| |||||||| ||||| |||||| | |||| || Sbjct 1886948 ATATGTCCTGGCATTTTTTGCCGCTTCCGACGGTATTGTCAACGAGAATCTGGTGGAGCG 1886889 Query 61263 --TTTCGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCC 61320 ||||| || || || |||| | || | || ||||| || || |||||||| Sbjct 1886888 GTTTTCGAGC--GAAGTACAAGCCGCTGAAGTCCGCTGTTTTTATGGATTCCAGATCATG 1886831 Query 61321 ATGGAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGGAGCGG 61380 ||||| || | |||||||| | ||| | | ||||||||||| ||||| || Sbjct 1886830 ATGGAAAACATTCACTCGGAAACATACTCTCTCCTCATCGATACCTACATTTCTGACTCT 1886771 Query 61381 GCGGAACGTGAACGATTGTTCAATGCCATCGAGACGATACCGGCGGTGAAGCGGAAAGCG 61440 | | ||||| | |||||| | |||||||| ||||| || |||| ||| | Sbjct 1886770 CAGCAGCGTGACTTCCTCTTCAATTCGATCGAGACTATACCATGCGTCAAGCAGAAGACC 1886711 Query 61441 GATTGGGCCTTCAATTGGATCACCAGTACAACG-GCTACATTTGGTGAACGA--TTGCTG 61497 || |||||| ||| |||||| | | ||||| | || |||| |||| ||| || Sbjct 1886710 GAGTGGGCCCTCAGGTGGATC-TCTGATCAACGATCGACGTTTG--CCACGAGGTTGGTG 1886654 Query 61498 GCATTTGCGGTGGTCGAGGGTGTATTTTTCAGTGGATCGTTTGCCGCAATCTTTTGGTTG 61557 || || || | ||| || || | || ||| ||||| ||||| ||||||| ||| || Sbjct 1886653 GCGTTCGCAGCGGTAGAAGGGATCTTCTTCTCCGGATCTTTTGCTTCAATCTTCTGGCTG 1886594 Query 61558 AAGAAACGTGGACTTATGCCCGGTCTGACCTTCAGCAATGAGTTGATATCACGCGACGAG 61617 |||||||| || || ||||| ||| | ||||| || || |||| || ||||| Sbjct 1886593 AAGAAACGAGGTCTCATGCCTGGTTTAACCTTTTCTAACGAACTGATTAGTCGGGACGAA 1886534 Query 61618 GGCATGCATTGTGATTTTGC 61637 || ||||| |||||||| Sbjct 1886533 GGGATGCACACAGATTTTGC 1886514 >seq5 Length=2096082 Score = 132 bits (146), Expect = 4e-26 Identities = 168/231 (73%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 66344 AATAGATCAGGTATCCAGAGGGCGTAGAAGAGATCGCGTGCTCGTTGCTCCTCAATGCCG 66403 || ||||| || |||||||| || |||||||| |||||||| || ||||| ||||| Sbjct 474037 AAAAGATCGGGGATCCAGAGTGCATAGAAGAGGTCGCGTGCACGGACTTCCTCCTTGCCG 473978 Query 66404 TGATTTTTGCGCAAGTCGAGGAACTCAAAGATGTCGGCATGCCATGGTTCCAGGTAGATG 66463 ||||||||||| | ||||| ||| || |||| ||||| |||||||| || |||||||| Sbjct 473977 TGATTTTTGCGGAGGTCGATGAATTCGTAGATATCGGCGTGCCATGGCTCAAGGTAGATT 473918 Query 66464 GCGAACGAGCCCATACGTTTGCCGCCACCTTGGTCGACGTAGCGAGCGACATTGTTGAAG 66523 || || | ||| || ||| || |||||||| || |||||||| || | | Sbjct 473917 GCAAAAGCACCCGGGCGCTTGTTACCGCCTTGGTCTACATAGCGAGCAGTCGCGTCGTAC 473858 Query 66524 ACACGCAACATCGGTACGAGCCCGTTAGATTTGCCATTGGTGCCGTCGATG 66574 | || | ||| || || | ||||| || | |||||||| || ||||| Sbjct 473857 GCGCGGAGCATGGGAACAATACCGTTGGAGTATCCATTGGTACCAGCGATG 473807 Score = 93.3 bits (102), Expect = 3e-14 Identities = 222/336 (66%), Gaps = 0/336 (0%) Strand=Plus/Minus Query 66587 GCCCGTATATCGTGAACATTCAGACCAATACCACCGGCCGTCTTCGAGATGGCAGCACAA 66646 ||||| || | ||||| ||| || ||||| |||||||||||||| ||| |||||| Sbjct 473740 GCCCGAATGTTGTGAATATTGAGTCCAATGCCACCGGCCGTCTTGCTGATCATAGCACAG 473681 Query 66647 TCGGCCACTGTCCGGAATATGCCGTCAATGGAGTCACCCTTGATGGTCAGGAGGTAGCAT 66706 | || || | || || ||||||||||| | || ||| | ||| | || Sbjct 473680 TTCTTCAGAGTTTCATAGATTCCCTCAATGGAGTCTTCTTTCATGCAAACCAGGAAACAC 473621 Query 66707 GAACTAAGTTGGGGTTTGGGTGTGGCGGCCGAGAAGAGGGTGGGTGTAGCGTGCGTAAAG 66766 || || | ||| || |||||||| | || |||||| || |||| ||||| || ||| Sbjct 473620 GAGCTCAATTGAGGATTGGGTGTACCCGCGTTGAAGAGTGTTGGTGAGGCGTGAGTGAAG 473561 Query 66767 TAATGGCGAGACATGTAATTGTACGTCTCGATGACAGCATCAATGTTTTCGCCATGAATC 66826 ||| | |||||| ||||| || || || | ||| | | |||| ||||| Sbjct 473560 TAACGTTCAGACATTAGGTTGTAGGTTTCAATAGCGCGATCGACATCAGCGCCGTGAATG 473501 Query 66827 CCGAGTGCACATCGCATCAGGAGGTATTGAGGCCGTTCGACCAGCCGATCCTTGATATGC 66886 |||| || ||||| | | || || || ||||| | | || | ||||| | Sbjct 473500 CCGACAGCTACGCGCATGATCATGTGCTGTGGACGTTCTGCGACACGGCCATTGATCCGA 473441 Query 66887 ATTAAGTAGGAGCGTTCCAGGGTCTTGATACCAAAG 66922 | | ||| || || ||||| ||||||| ||||||| Sbjct 473440 AGAAGGTAAGAACGCTCCAGCGTCTTGAAACCAAAG 473405 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397567932164960