Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hypsizygus_20marmoreus_20[genbank_20GCA_5F001605315.1_202016-03-31] 340 sequences; 41,626,055 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq286 199 3e-46 seq335 140 3e-28 seq308 113 4e-20 seq2 87.8 1e-12 >seq286 Length=987428 Score = 199 bits (220), Expect = 3e-46 Identities = 374/544 (69%), Gaps = 7/544 (1%) Strand=Plus/Minus Query 61087 ATTTGGCGCATGTACAAAAAGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGTCGATTTG 61146 || |||| |||||||| ||||| || || || || ||||| | ||||| | || | Sbjct 832621 ATCTGGCAAATGTACAAGAAGGCTGAGGCGTCGTTTTGGACTGCAGAGGAAATGGACCTC 832562 Query 61147 TCCAAAGACATGAATGACTGGGAG---CGT-TTATCGAGCGGTGAACAACATTTCATTAA 61202 || ||||| || |||||||| || ||| ||| | || | |||||||| Sbjct 832561 TCGAAAGATATTCATGACTGGACAACCCGCCTTAACGA-CAACGAGCGCCATTTCATCTC 832503 Query 61203 ACATGTGTTGGCGTTCTTTGCCGCTTCGGACGGTATCGTCAATGAGAATTTATTGGAACG 61262 ||||| | || ||||| || || ||||| ||||| ||||| ||||| | | || || Sbjct 832502 CCATGTCCTCGCTTTCTTCGCAGCCTCGGATGGTATTGTCAACGAGAACCTTGTCGAGCG 832443 Query 61263 TTTCGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCAT 61322 || | | ||||| ||||| | ||||| || |||||||| |||||||| || || Sbjct 832442 CTTTTCCAACGAGGTCCAAGTTGCCGAGGCTCGATGTTTCTATGGCTTCCAAATCATGAT 832383 Query 61323 GGAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGGAGCGGGC 61382 |||||| | ||||| |||| ||| |||||||||| || || |||| ||| || Sbjct 832382 GGAGAACATTCACTCAGAGACGTATTCGCTTCTCATCGACACCTATATCAAGGACGCTGC 832323 Query 61383 GGAACGTGAACGATTGTTCAATGCCATCGAGACGATACCGGCGGTGAAGCGGAAAGCGGA 61442 ||||| || | ||| | ||| | ||||| || ||| || ||||| || || || Sbjct 832322 CGAACGCGAGTACCTTTTCGACGCCGTGGAGACCATTCCGTGTGTCAAGCGCAAGGCAGA 832263 Query 61443 TTGGGCCTTCAATTGGATCACCAGTACAACGG-CTACATTTGGTGAACGATTGCTGGCAT 61501 ||||| | || |||||| || | | |||| | || ||||||||||| ||| |||| | Sbjct 832262 CTGGGCACTGAACTGGATCTCC-GACCGACGGTCAACTTTTGGTGAACGCTTGGTGGCGT 832204 Query 61502 TTGCGGTGGTCGAGGGTGTATTTTTCAGTGGATCGTTTGCCGCAATCTTTTGGTTGAAGA 61561 |||| | || || || | || ||| || || || || | ||||| ||| |||||| Sbjct 832203 TTGCTGCTGTTGAAGGCATCTTCTTCTCGGGCTCTTTCGCGTCCATCTTCTGGATGAAGA 832144 Query 61562 AACGTGGACTTATGCCCGGTCTGACCTTCAGCAATGAGTTGATATCACGCGACGAGGGCA 61621 | || || | ||||| || ||||| || ||||||| | || |||||||| || | Sbjct 832143 AGCGAGGCTTGATGCCTGGCCTGACTTTTTCCAATGAGCTCATTAGCCGCGACGAAGGAA 832084 Query 61622 TGCA 61625 |||| Sbjct 832083 TGCA 832080 Score = 141 bits (156), Expect = 7e-29 Identities = 289/424 (68%), Gaps = 4/424 (1%) Strand=Plus/Plus Query 61204 CATGTGTTGGCGTTCTTTGCCGCTTCGGACGGTATCGTCAATGAGAATTTATTGGAACG- 61262 ||||| | || |||||||| || || || || || || || ||||| | | ||| | Sbjct 833850 CATGTTCTTGCTTTCTTTGCGGCCTCAGATGGCATTGTAAACGAGAACCTCGTCGAAAGG 833909 Query 61263 TTTCGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCAT 61322 ||| | | | || |||| || | |||||||||| ||||| ||||| || || || Sbjct 833910 TTTTGTGGTGAAG-TGCAGGTACCCGAGGCGCGTTCCTTCTATGGCTTTCAAATCATGAT 833968 Query 61323 GGAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGGAGCGGGC 61382 ||||||| |||| || || | ||| | || |||||| ||||||| ||| | | Sbjct 833969 GGAGAATATCCATTCCGAAACGTATTCGTTGCTTATCGATGGCTACATCAAGGATCCGCA 834028 Query 61383 GGAACGTGAACGATTGTTCAATGCCATCGAGACGATACCGGCGGTGAAGCGGAAAGCGGA 61442 ||| || | | | ||| | ||||| || || || || | ||||| ||||| || Sbjct 834029 GGAGCGGGCCCACCTTTTCGACGCCATAGACACCATTCCTTGCATCAAGCGCAAAGCTGA 834088 Query 61443 TTGGGCCTTCAATTGGATCACCAGTACAACGG-CTACATTTGGTGAACGATTGCTGGCAT 61501 |||||| | || ||||| | || ||| | || |||| ||||| | | || | Sbjct 834089 TTGGGCTCTAAAATGGATTTC-AGACAAACATTCAACCTTTGCGGAACGTCTAGTTGCCT 834147 Query 61502 TTGCGGTGGTCGAGGGTGTATTTTTCAGTGGATCGTTTGCCGCAATCTTTTGGTTGAAGA 61561 |||| | || || || |||| || ||| ||||||||| |||| || ||| | |||| Sbjct 834148 TTGCTGCTGTGGAAGGGATATTCTTTTCTGGGTCGTTTGCCTCAATATTCTGGATCAAGA 834207 Query 61562 AACGTGGACTTATGCCCGGTCTGACCTTCAGCAATGAGTTGATATCACGCGACGAGGGCA 61621 ||||||| |||||||| || ||||| || ||||||| | || || ||||||||| Sbjct 834208 AACGTGGTCTTATGCCTGGCCTGACATTTTCCAATGAGCTTATTAGTCGAGACGAGGGCT 834267 Query 61622 TGCA 61625 |||| Sbjct 834268 TGCA 834271 Score = 107 bits (118), Expect = 2e-18 Identities = 122/164 (74%), Gaps = 0/164 (0%) Strand=Plus/Minus Query 61756 CTCATCGGCATGAATTGTGGACTAATGTCGCAGTATATTGAATTTGTTGCCGACCGTCTG 61815 ||||| ||||||||| || | |||| || || ||||||||||||||||||||||| Sbjct 831897 CTCATTGGCATGAATGCTGACTTGATGTGTCAATACATTGAATTTGTTGCCGACCGTCTC 831838 Query 61816 TTGGTCGATTTGGGTATGAAGCGGATCTATAATACGAAAAACCCATTTGATTTCATGGAC 61875 | || | | || | | | | ||||| ||| ||||||||| || ||||||||| Sbjct 831837 CTCGTTGCCCTCGGAAATGACAAGTTGTATAACTCGACAAACCCATTCGACTTCATGGAC 831778 Query 61876 ATGATTTCGCTGGATGGCAAGACGAATTTTTTCGAGAAACGTGT 61919 ||||| || ||| | |||||||| || || |||||||| || || Sbjct 831777 ATGATCTCACTGCAGGGCAAGACAAACTTCTTCGAGAAGCGCGT 831734 >seq335 Length=51571 Score = 140 bits (154), Expect = 3e-28 Identities = 272/395 (69%), Gaps = 14/395 (4%) Strand=Plus/Plus Query 61203 ACATGTGTTGGCGTTCTTTGCCGCTTCGGACGGTATCGTCAATGAGAATTTATTGGAACG 61262 ||| ||| |||| |||||||| || || ||||| |||||||| || ||| | |||||||| Sbjct 19580 ACACGTGCTGGCATTCTTTGCTGCCTCCGACGGCATCGTCAACGAAAATCTTTTGGAACG 19639 Query 61263 --TTTCGCGCAGGA--GGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTG 61318 |||| || || ||| || | |||||| |||| ||| ||||| || |||| Sbjct 19640 GTTTTCTCGAGAGATCGGTCCATG----GGAGGCCCGTTCTTTTTACGGTTTTCAGACAA 19695 Query 61319 CCATGGAGAATGTCCACTCGGAG--ATGTACAGTGTTCTCATCGATACGTACATCAGGGA 61376 || |||||||| ||||| || || | | |||| || ||||| || || |||| Sbjct 19696 TGATCGAGAATGTTCACTCCGAAGCATATTCCTTGTTG--ATAGATACCTATATTCGGGA 19753 Query 61377 GCGGGCGGAACGTGAACGAT-TGTTCAATGCCATCGAGACGATACCGGCGGTGAAGCGGA 61435 | || ||||| || | || ||||||| ||||||||||| || || | | ||| Sbjct 19754 CAGCGCCGAACG-GACCTATCTGTTCAACGCCATCGAGACCATTCCTTGTATTCGGAGGA 19812 Query 61436 AAGCGGATTGGGCCTTCAATTGGATCACCAGTACAACGGCTACATTTGGTGAACGATTGC 61495 |||| | || || || || ||||| | | | | || | ||| || || ||| Sbjct 19813 AAGCAGGCTGTGCATTAAAATGGATTAACGATCCGACCCGCATTTTTCCCGAGCGCTTGG 19872 Query 61496 TGGCATTTGCGGTGGTCGAGGGTGTATTTTTCAGTGGATCGTTTGCCGCAATCTTTTGGT 61555 |||| || || ||||| || | || ||| ||||||||||| || ||| |||| Sbjct 19873 TGGCCTTCGCTTGTGTCGAAGGCATTTTCTTCTCCGGATCGTTTGCAGCGGTCTATTGGA 19932 Query 61556 TGAAGAAACGTGGACTTATGCCCGGTCTGACCTTC 61590 | |||||||| || |||||||| ||| |||| ||| Sbjct 19933 TCAAGAAACGGGGGCTTATGCCAGGTTTGACTTTC 19967 Score = 89.7 bits (98), Expect = 4e-13 Identities = 64/74 (86%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 61855 AACCCATTTGATTTCATGGACATGATTTCGCTGGATGGCAAGACGAATTTTTTCGAGAAA 61914 || || |||||||||||||| |||||||| || || || ||||||||||||||||||||| Sbjct 20275 AATCCCTTTGATTTCATGGATATGATTTCACTAGAGGGTAAGACGAATTTTTTCGAGAAA 20334 Query 61915 CGTGTAGGCGACTA 61928 || || ||||| || Sbjct 20335 CGAGTTGGCGAATA 20348 >seq308 Length=957167 Score = 113 bits (124), Expect = 4e-20 Identities = 128/169 (76%), Gaps = 2/169 (1%) Strand=Plus/Plus Query 66344 AATAGATCAGGTATCCAGAGGGCGTAGAAGAGATCGCGTGCTCGTTGC-TCCTCAATGCC 66402 || || ||||| ||||| || |||||||||||||| | ||| | | || || || |||| Sbjct 618962 AAAAGGTCAGGGATCCACAGCGCGTAGAAGAGATCTCTTGC-CCTAGCTTCTTCCTTGCC 619020 Query 66403 GTGATTTTTGCGCAAGTCGAGGAACTCAAAGATGTCGGCATGCCATGGTTCCAGGTAGAT 66462 ||||| || || || |||||||| ||||| | || |||||||| ||||| | |||||| Sbjct 619021 ATGATTCTTCCGTAAATCGAGGAAATCAAACACATCAGCATGCCAGGGTTCGATGTAGAT 619080 Query 66463 GGCGAACGAGCCCATACGTTTGCCGCCACCTTGGTCGACGTAGCGAGCG 66511 ||||| | || || ||| || ||||| ||||||||||||||| Sbjct 619081 CGCGAATGCTCCTGGTCGCTTGTTTCCTCCTTGATCGACGTAGCGAGCG 619129 Score = 102 bits (112), Expect = 6e-17 Identities = 217/324 (67%), Gaps = 0/324 (0%) Strand=Plus/Plus Query 66599 TGAACATTCAGACCAATACCACCGGCCGTCTTCGAGATGGCAGCACAATCGGCCACTGTC 66658 |||| || |||||||| || || ||||| || ||| |||||| || || Sbjct 619269 TGAATGTTGAGACCAATTCCTCCAGCCGTTTTGCTGATCATGGCACAACTTTTCAAGGTA 619328 Query 66659 CGGAATATGCCGTCAATGGAGTCACCCTTGATGGTCAGGAGGTAGCATGAACTAAGTTGG 66718 | | || || ||||| |||||| | || ||| | ||| |||| || || || ||| Sbjct 619329 TCGTAAATACCCTCAATCGAGTCATCTTTCATGCAGACAAGGAAGCAGGAGCTGAGCTGG 619388 Query 66719 GGTTTGGGTGTGGCGGCCGAGAAGAGGGTGGGTGTAGCGTGCGTAAAGTAATGGCGAGAC 66778 || ||||| || |||| ||| || || || | || ||||| |||| | | |||| Sbjct 619389 GGATTGGGAGTTCCGGCATTGAAAAGTGTCGGCGATGCATGCGTGAAGTGACGCTCAGAC 619448 Query 66779 ATGTAATTGTACGTCTCGATGACAGCATCAATGTTTTCGCCATGAATCCCGAGTGCACAT 66838 || |||||||||||||| ||| ||| || | ||||||||| || | || | Sbjct 619449 ATCAGGTTGTACGTCTCGATCACACGATCTATATCAGAGCCATGAATACCAACGGCGACT 619508 Query 66839 CGCATCAGGAGGTATTGAGGCCGTTCGACCAGCCGATCCTTGATATGCATTAAGTAGGAG 66898 ||||| | | || ||| ||||| || | | ||| | |||||| | | | |||||| Sbjct 619509 CGCATAATCATGTGTTGTGGCCGCTCAGCGACTCGACCATTGATACGGAGAAGGTAGGAA 619568 Query 66899 CGTTCCAGGGTCTTGATACCAAAG 66922 || ||||| || |||| |||||| Sbjct 619569 CGCTCCAGAGTTTTGAATCCAAAG 619592 >seq2 Length=2111947 Score = 87.8 bits (96), Expect = 1e-12 Identities = 105/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 61496 TGGCATTTGCGGTGGTCGAGGGTGTATTTTTCAGTGGATCGTTTGCCGCAATCTTTTGGT 61555 |||| ||||| ||||| || ||||||| ||| || || || || || ||||||| Sbjct 204080 TGGCGTTTGCCTGTGTCGAAGGCATATTTTTTTCTGGTTCTTTCGCGGCCATATTTTGGT 204021 Query 61556 TGAAGAAACGTGGACTTATGCCCGGTCTGACCTTCAGCAATGAGTTGATATCACGCGACG 61615 ||||||||||||| | ||||||||| | || || ||||||| | || | |||| Sbjct 204020 TGAAGAAACGTGGCTTGATGCCCGGTTTAACATTTTCCAATGAGCTCATCAGTAGAGACG 203961 Query 61616 AGGGCATGCATTGTGATTTTGCT 61638 ||||| ||||| ||||||||| Sbjct 203960 AGGGCTTGCATACGGATTTTGCT 203938 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397566352577600