Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Kockovaella_20imperatae_20[genbank_20GCA_5F002102565.1_202017-04-20]
38 sequences; 17,465,713 total letters
Query= AAMG01000185.1
Length=266
Score E
Sequences producing significant alignments: (Bits) Value
seq27 298 8e-79
seq26 298 8e-79
>seq27
Length=18150
Score = 298 bits (330), Expect = 8e-79
Identities = 212/239 (89%), Gaps = 3/239 (1%)
Strand=Plus/Minus
Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60
|||||||||||||||||||| |||||||||| |||||||||| ||||||||||| ||| |
Sbjct 6468 GTACAAAGGGCAGGGACGTAATCAACGCGAG-TTGATGACTCACGCTTACTAGGTATT-C 6411
Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCA-AAGATT 119
||||||||||| ||| |||||||||| |||||||||| ||||| | ||||| ||||||
Sbjct 6410 CTCGTTGAAGAGCAATAATTGCAATGCTCTATCCCCAGCACGACTGAGTTTCACAAGATT 6351
Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCG 179
|||| ||||| |||| ||||||||| ||||| || | |||||||||||||||||||
Sbjct 6350 ACCCAGACCTCTCGGTCAAGGTGATGAACTCGCTGGCTCAGTCAGTGTAGCGCGCGTGCG 6291
Query 180 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGCCTAAA 238
||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||
Sbjct 6290 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTCGGCTAAA 6232
Score = 298 bits (330), Expect = 8e-79
Identities = 212/239 (89%), Gaps = 3/239 (1%)
Strand=Plus/Minus
Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60
|||||||||||||||||||| |||||||||| |||||||||| ||||||||||| ||| |
Sbjct 14182 GTACAAAGGGCAGGGACGTAATCAACGCGAG-TTGATGACTCACGCTTACTAGGTATT-C 14125
Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCA-AAGATT 119
||||||||||| ||| |||||||||| |||||||||| ||||| | ||||| ||||||
Sbjct 14124 CTCGTTGAAGAGCAATAATTGCAATGCTCTATCCCCAGCACGACTGAGTTTCACAAGATT 14065
Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCG 179
|||| ||||| |||| ||||||||| ||||| || | |||||||||||||||||||
Sbjct 14064 ACCCAGACCTCTCGGTCAAGGTGATGAACTCGCTGGCTCAGTCAGTGTAGCGCGCGTGCG 14005
Query 180 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGCCTAAA 238
||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||
Sbjct 14004 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTCGGCTAAA 13946
>seq26
Length=18679
Score = 298 bits (330), Expect = 8e-79
Identities = 212/239 (89%), Gaps = 3/239 (1%)
Strand=Plus/Plus
Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60
|||||||||||||||||||| |||||||||| |||||||||| ||||||||||| ||| |
Sbjct 786 GTACAAAGGGCAGGGACGTAATCAACGCGAG-TTGATGACTCACGCTTACTAGGTATT-C 843
Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCA-AAGATT 119
||||||||||| ||| |||||||||| |||||||||| ||||| | ||||| ||||||
Sbjct 844 CTCGTTGAAGAGCAATAATTGCAATGCTCTATCCCCAGCACGACTGAGTTTCACAAGATT 903
Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCG 179
|||| ||||| |||| ||||||||| ||||| || | |||||||||||||||||||
Sbjct 904 ACCCAGACCTCTCGGTCAAGGTGATGAACTCGCTGGCTCAGTCAGTGTAGCGCGCGTGCG 963
Query 180 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGCCTAAA 238
||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||
Sbjct 964 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTCGGCTAAA 1022
Score = 298 bits (330), Expect = 8e-79
Identities = 212/239 (89%), Gaps = 3/239 (1%)
Strand=Plus/Plus
Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60
|||||||||||||||||||| |||||||||| |||||||||| ||||||||||| ||| |
Sbjct 8499 GTACAAAGGGCAGGGACGTAATCAACGCGAG-TTGATGACTCACGCTTACTAGGTATT-C 8556
Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCA-AAGATT 119
||||||||||| ||| |||||||||| |||||||||| ||||| | ||||| ||||||
Sbjct 8557 CTCGTTGAAGAGCAATAATTGCAATGCTCTATCCCCAGCACGACTGAGTTTCACAAGATT 8616
Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCG 179
|||| ||||| |||| ||||||||| ||||| || | |||||||||||||||||||
Sbjct 8617 ACCCAGACCTCTCGGTCAAGGTGATGAACTCGCTGGCTCAGTCAGTGTAGCGCGCGTGCG 8676
Query 180 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGCCTAAA 238
||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||
Sbjct 8677 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTCGGCTAAA 8735
Score = 298 bits (330), Expect = 8e-79
Identities = 212/239 (89%), Gaps = 3/239 (1%)
Strand=Plus/Plus
Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60
|||||||||||||||||||| |||||||||| |||||||||| ||||||||||| ||| |
Sbjct 16213 GTACAAAGGGCAGGGACGTAATCAACGCGAG-TTGATGACTCACGCTTACTAGGTATT-C 16270
Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCA-AAGATT 119
||||||||||| ||| |||||||||| |||||||||| ||||| | ||||| ||||||
Sbjct 16271 CTCGTTGAAGAGCAATAATTGCAATGCTCTATCCCCAGCACGACTGAGTTTCACAAGATT 16330
Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCG 179
|||| ||||| |||| ||||||||| ||||| || | |||||||||||||||||||
Sbjct 16331 ACCCAGACCTCTCGGTCAAGGTGATGAACTCGCTGGCTCAGTCAGTGTAGCGCGCGTGCG 16390
Query 180 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGCCTAAA 238
||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||
Sbjct 16391 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTCGGCTAAA 16449
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 751999723170
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |