Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Kockovaella_20imperatae_20[genbank_20GCA_5F002102565.1_202017-04-20] 38 sequences; 17,465,713 total letters Query= AAMG01000185.1 Length=266 Score E Sequences producing significant alignments: (Bits) Value seq27 298 8e-79 seq26 298 8e-79 >seq27 Length=18150 Score = 298 bits (330), Expect = 8e-79 Identities = 212/239 (89%), Gaps = 3/239 (1%) Strand=Plus/Minus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||||||||||||||| |||||||||| |||||||||| ||||||||||| ||| | Sbjct 6468 GTACAAAGGGCAGGGACGTAATCAACGCGAG-TTGATGACTCACGCTTACTAGGTATT-C 6411 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCA-AAGATT 119 ||||||||||| ||| |||||||||| |||||||||| ||||| | ||||| |||||| Sbjct 6410 CTCGTTGAAGAGCAATAATTGCAATGCTCTATCCCCAGCACGACTGAGTTTCACAAGATT 6351 Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCG 179 |||| ||||| |||| ||||||||| ||||| || | ||||||||||||||||||| Sbjct 6350 ACCCAGACCTCTCGGTCAAGGTGATGAACTCGCTGGCTCAGTCAGTGTAGCGCGCGTGCG 6291 Query 180 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGCCTAAA 238 ||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||| Sbjct 6290 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTCGGCTAAA 6232 Score = 298 bits (330), Expect = 8e-79 Identities = 212/239 (89%), Gaps = 3/239 (1%) Strand=Plus/Minus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||||||||||||||| |||||||||| |||||||||| ||||||||||| ||| | Sbjct 14182 GTACAAAGGGCAGGGACGTAATCAACGCGAG-TTGATGACTCACGCTTACTAGGTATT-C 14125 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCA-AAGATT 119 ||||||||||| ||| |||||||||| |||||||||| ||||| | ||||| |||||| Sbjct 14124 CTCGTTGAAGAGCAATAATTGCAATGCTCTATCCCCAGCACGACTGAGTTTCACAAGATT 14065 Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCG 179 |||| ||||| |||| ||||||||| ||||| || | ||||||||||||||||||| Sbjct 14064 ACCCAGACCTCTCGGTCAAGGTGATGAACTCGCTGGCTCAGTCAGTGTAGCGCGCGTGCG 14005 Query 180 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGCCTAAA 238 ||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||| Sbjct 14004 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTCGGCTAAA 13946 >seq26 Length=18679 Score = 298 bits (330), Expect = 8e-79 Identities = 212/239 (89%), Gaps = 3/239 (1%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||||||||||||||| |||||||||| |||||||||| ||||||||||| ||| | Sbjct 786 GTACAAAGGGCAGGGACGTAATCAACGCGAG-TTGATGACTCACGCTTACTAGGTATT-C 843 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCA-AAGATT 119 ||||||||||| ||| |||||||||| |||||||||| ||||| | ||||| |||||| Sbjct 844 CTCGTTGAAGAGCAATAATTGCAATGCTCTATCCCCAGCACGACTGAGTTTCACAAGATT 903 Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCG 179 |||| ||||| |||| ||||||||| ||||| || | ||||||||||||||||||| Sbjct 904 ACCCAGACCTCTCGGTCAAGGTGATGAACTCGCTGGCTCAGTCAGTGTAGCGCGCGTGCG 963 Query 180 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGCCTAAA 238 ||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||| Sbjct 964 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTCGGCTAAA 1022 Score = 298 bits (330), Expect = 8e-79 Identities = 212/239 (89%), Gaps = 3/239 (1%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||||||||||||||| |||||||||| |||||||||| ||||||||||| ||| | Sbjct 8499 GTACAAAGGGCAGGGACGTAATCAACGCGAG-TTGATGACTCACGCTTACTAGGTATT-C 8556 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCA-AAGATT 119 ||||||||||| ||| |||||||||| |||||||||| ||||| | ||||| |||||| Sbjct 8557 CTCGTTGAAGAGCAATAATTGCAATGCTCTATCCCCAGCACGACTGAGTTTCACAAGATT 8616 Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCG 179 |||| ||||| |||| ||||||||| ||||| || | ||||||||||||||||||| Sbjct 8617 ACCCAGACCTCTCGGTCAAGGTGATGAACTCGCTGGCTCAGTCAGTGTAGCGCGCGTGCG 8676 Query 180 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGCCTAAA 238 ||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||| Sbjct 8677 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTCGGCTAAA 8735 Score = 298 bits (330), Expect = 8e-79 Identities = 212/239 (89%), Gaps = 3/239 (1%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||||||||||||||| |||||||||| |||||||||| ||||||||||| ||| | Sbjct 16213 GTACAAAGGGCAGGGACGTAATCAACGCGAG-TTGATGACTCACGCTTACTAGGTATT-C 16270 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCA-AAGATT 119 ||||||||||| ||| |||||||||| |||||||||| ||||| | ||||| |||||| Sbjct 16271 CTCGTTGAAGAGCAATAATTGCAATGCTCTATCCCCAGCACGACTGAGTTTCACAAGATT 16330 Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCG 179 |||| ||||| |||| ||||||||| ||||| || | ||||||||||||||||||| Sbjct 16331 ACCCAGACCTCTCGGTCAAGGTGATGAACTCGCTGGCTCAGTCAGTGTAGCGCGCGTGCG 16390 Query 180 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGCCTAAA 238 ||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||| Sbjct 16391 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTCGGCTAAA 16449 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 751999723170