Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Kockovaella_20imperatae_20[genbank_20GCA_5F002102565.1_202017-04-20] 38 sequences; 17,465,713 total letters Query= AAMG01000278.1 Length=318 Score E Sequences producing significant alignments: (Bits) Value seq29 381 1e-103 seq27 381 1e-103 seq26 381 1e-103 >seq29 Length=1906 Score = 381 bits (422), Expect = 1e-103 Identities = 274/313 (88%), Gaps = 2/313 (1%) Strand=Plus/Plus Query 7 GTCCGGCCGGGCCTTTCCTTCTGGGGAT-CCGCATGCCCTTCACTGGGTGTGCCGGGGAG 65 ||||||| ||||||| ||| |||| || ||||||| |||| ||||||||||| | ||| Sbjct 1370 GTCCGGCTGGGCCTTACCTCCTGGTGAGGCCGCATGTCCTTTACTGGGTGTGCGGTGGAA 1429 Query 66 CCAGGACTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTCGAATACATT 125 |||||| |||||| |||| |||||||||||||||||||||||| | ||| |||||||||| Sbjct 1430 CCAGGAATTTTACCTTGAGAAAATTAGAGTGTTCAAAGCAGGCATATGCCCGAATACATT 1489 Query 126 AGCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTA 185 |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 1490 AGCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGATCGCCGTA 1549 Query 186 ATGATTAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGA 245 |||||||||||||| |||||||| | ||||||| ||| ||||||||||||||| || Sbjct 1550 ATGATTAATAGGGACGGTCGGGGGCATTAGTATTCCGTTGCTAGAGGTGAAATTCTTAGA 1609 Query 246 TTTATTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAA 305 |||| ||||||||||| |||||||||| || ||||||| ||||||||| |||| ||| Sbjct 1610 TTTACGGAAGACTAACTTCTGCGAAAGCATTTGCCAAGGACGTTTTCATTGATCA-AGAA 1668 Query 306 CGAAAGTTAGGGG 318 |||| |||||||| Sbjct 1669 CGAAGGTTAGGGG 1681 >seq27 Length=18150 Score = 381 bits (422), Expect = 1e-103 Identities = 274/313 (88%), Gaps = 2/313 (1%) Strand=Plus/Plus Query 7 GTCCGGCCGGGCCTTTCCTTCTGGGGAT-CCGCATGCCCTTCACTGGGTGTGCCGGGGAG 65 ||||||| ||||||| ||| |||| || ||||||| |||| ||||||||||| | ||| Sbjct 5511 GTCCGGCTGGGCCTTACCTCCTGGTGAGGCCGCATGTCCTTTACTGGGTGTGCGGTGGAA 5570 Query 66 CCAGGACTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTCGAATACATT 125 |||||| |||||| |||| |||||||||||||||||||||||| | ||| |||||||||| Sbjct 5571 CCAGGAATTTTACCTTGAGAAAATTAGAGTGTTCAAAGCAGGCATATGCCCGAATACATT 5630 Query 126 AGCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTA 185 |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 5631 AGCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGATCGCCGTA 5690 Query 186 ATGATTAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGA 245 |||||||||||||| |||||||| | ||||||| ||| ||||||||||||||| || Sbjct 5691 ATGATTAATAGGGACGGTCGGGGGCATTAGTATTCCGTTGCTAGAGGTGAAATTCTTAGA 5750 Query 246 TTTATTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAA 305 |||| ||||||||||| |||||||||| || ||||||| ||||||||| |||| ||| Sbjct 5751 TTTACGGAAGACTAACTTCTGCGAAAGCATTTGCCAAGGACGTTTTCATTGATCA-AGAA 5809 Query 306 CGAAAGTTAGGGG 318 |||| |||||||| Sbjct 5810 CGAAGGTTAGGGG 5822 Score = 381 bits (422), Expect = 1e-103 Identities = 274/313 (88%), Gaps = 2/313 (1%) Strand=Plus/Plus Query 7 GTCCGGCCGGGCCTTTCCTTCTGGGGAT-CCGCATGCCCTTCACTGGGTGTGCCGGGGAG 65 ||||||| ||||||| ||| |||| || ||||||| |||| ||||||||||| | ||| Sbjct 13225 GTCCGGCTGGGCCTTACCTCCTGGTGAGGCCGCATGTCCTTTACTGGGTGTGCGGTGGAA 13284 Query 66 CCAGGACTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTCGAATACATT 125 |||||| |||||| |||| |||||||||||||||||||||||| | ||| |||||||||| Sbjct 13285 CCAGGAATTTTACCTTGAGAAAATTAGAGTGTTCAAAGCAGGCATATGCCCGAATACATT 13344 Query 126 AGCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTA 185 |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 13345 AGCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGATCGCCGTA 13404 Query 186 ATGATTAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGA 245 |||||||||||||| |||||||| | ||||||| ||| ||||||||||||||| || Sbjct 13405 ATGATTAATAGGGACGGTCGGGGGCATTAGTATTCCGTTGCTAGAGGTGAAATTCTTAGA 13464 Query 246 TTTATTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAA 305 |||| ||||||||||| |||||||||| || ||||||| ||||||||| |||| ||| Sbjct 13465 TTTACGGAAGACTAACTTCTGCGAAAGCATTTGCCAAGGACGTTTTCATTGATCA-AGAA 13523 Query 306 CGAAAGTTAGGGG 318 |||| |||||||| Sbjct 13524 CGAAGGTTAGGGG 13536 >seq26 Length=18679 Score = 381 bits (422), Expect = 1e-103 Identities = 274/313 (88%), Gaps = 2/313 (1%) Strand=Plus/Minus Query 7 GTCCGGCCGGGCCTTTCCTTCTGGGGAT-CCGCATGCCCTTCACTGGGTGTGCCGGGGAG 65 ||||||| ||||||| ||| |||| || ||||||| |||| ||||||||||| | ||| Sbjct 1743 GTCCGGCTGGGCCTTACCTCCTGGTGAGGCCGCATGTCCTTTACTGGGTGTGCGGTGGAA 1684 Query 66 CCAGGACTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTCGAATACATT 125 |||||| |||||| |||| |||||||||||||||||||||||| | ||| |||||||||| Sbjct 1683 CCAGGAATTTTACCTTGAGAAAATTAGAGTGTTCAAAGCAGGCATATGCCCGAATACATT 1624 Query 126 AGCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTA 185 |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 1623 AGCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGATCGCCGTA 1564 Query 186 ATGATTAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGA 245 |||||||||||||| |||||||| | ||||||| ||| ||||||||||||||| || Sbjct 1563 ATGATTAATAGGGACGGTCGGGGGCATTAGTATTCCGTTGCTAGAGGTGAAATTCTTAGA 1504 Query 246 TTTATTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAA 305 |||| ||||||||||| |||||||||| || ||||||| ||||||||| |||| ||| Sbjct 1503 TTTACGGAAGACTAACTTCTGCGAAAGCATTTGCCAAGGACGTTTTCATTGATCA-AGAA 1445 Query 306 CGAAAGTTAGGGG 318 |||| |||||||| Sbjct 1444 CGAAGGTTAGGGG 1432 Score = 381 bits (422), Expect = 1e-103 Identities = 274/313 (88%), Gaps = 2/313 (1%) Strand=Plus/Minus Query 7 GTCCGGCCGGGCCTTTCCTTCTGGGGAT-CCGCATGCCCTTCACTGGGTGTGCCGGGGAG 65 ||||||| ||||||| ||| |||| || ||||||| |||| ||||||||||| | ||| Sbjct 9456 GTCCGGCTGGGCCTTACCTCCTGGTGAGGCCGCATGTCCTTTACTGGGTGTGCGGTGGAA 9397 Query 66 CCAGGACTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTCGAATACATT 125 |||||| |||||| |||| |||||||||||||||||||||||| | ||| |||||||||| Sbjct 9396 CCAGGAATTTTACCTTGAGAAAATTAGAGTGTTCAAAGCAGGCATATGCCCGAATACATT 9337 Query 126 AGCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTA 185 |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 9336 AGCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGATCGCCGTA 9277 Query 186 ATGATTAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGA 245 |||||||||||||| |||||||| | ||||||| ||| ||||||||||||||| || Sbjct 9276 ATGATTAATAGGGACGGTCGGGGGCATTAGTATTCCGTTGCTAGAGGTGAAATTCTTAGA 9217 Query 246 TTTATTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAA 305 |||| ||||||||||| |||||||||| || ||||||| ||||||||| |||| ||| Sbjct 9216 TTTACGGAAGACTAACTTCTGCGAAAGCATTTGCCAAGGACGTTTTCATTGATCA-AGAA 9158 Query 306 CGAAAGTTAGGGG 318 |||| |||||||| Sbjct 9157 CGAAGGTTAGGGG 9145 Score = 381 bits (422), Expect = 1e-103 Identities = 274/313 (88%), Gaps = 2/313 (1%) Strand=Plus/Minus Query 7 GTCCGGCCGGGCCTTTCCTTCTGGGGAT-CCGCATGCCCTTCACTGGGTGTGCCGGGGAG 65 ||||||| ||||||| ||| |||| || ||||||| |||| ||||||||||| | ||| Sbjct 17170 GTCCGGCTGGGCCTTACCTCCTGGTGAGGCCGCATGTCCTTTACTGGGTGTGCGGTGGAA 17111 Query 66 CCAGGACTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTCGAATACATT 125 |||||| |||||| |||| |||||||||||||||||||||||| | ||| |||||||||| Sbjct 17110 CCAGGAATTTTACCTTGAGAAAATTAGAGTGTTCAAAGCAGGCATATGCCCGAATACATT 17051 Query 126 AGCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTA 185 |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 17050 AGCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGATCGCCGTA 16991 Query 186 ATGATTAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGA 245 |||||||||||||| |||||||| | ||||||| ||| ||||||||||||||| || Sbjct 16990 ATGATTAATAGGGACGGTCGGGGGCATTAGTATTCCGTTGCTAGAGGTGAAATTCTTAGA 16931 Query 246 TTTATTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAA 305 |||| ||||||||||| |||||||||| || ||||||| ||||||||| |||| ||| Sbjct 16930 TTTACGGAAGACTAACTTCTGCGAAAGCATTTGCCAAGGACGTTTTCATTGATCA-AGAA 16872 Query 306 CGAAAGTTAGGGG 318 |||| |||||||| Sbjct 16871 CGAAGGTTAGGGG 16859 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 915199652224