Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Kockovaella_20imperatae_20[genbank_20GCA_5F002102565.1_202017-04-20] 38 sequences; 17,465,713 total letters Query= AAMG01000911.1 Length=280 Score E Sequences producing significant alignments: (Bits) Value seq27 365 7e-99 seq26 365 7e-99 >seq27 Length=18150 Score = 365 bits (404), Expect = 7e-99 Identities = 235/257 (91%), Gaps = 0/257 (0%) Strand=Plus/Minus Query 2 ACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 61 ||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 6323 ACTCGCTGGCTCAGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 6264 Query 62 CCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGCC 121 |||||||||||||||||||||| | |||| | ||| | ||||||||||||||| | | Sbjct 6263 CCTGTTATTGCCTCAAACTTCCGTCGGCTAAACGCCGACAGTCCCTCTAAGAAGTCGACG 6204 Query 122 ACCAACCATAGTCGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAA 181 |||| || || || | |||||||||||||||||||||||||||||||||||||||| Sbjct 6203 ACCAGCCGGAGCCGGCCTGACTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAA 6144 Query 182 CCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAA 241 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 6143 CCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAA 6084 Query 242 AGAGCTATCAATCTGTC 258 ||||||||||||||||| Sbjct 6083 AGAGCTATCAATCTGTC 6067 Score = 365 bits (404), Expect = 7e-99 Identities = 235/257 (91%), Gaps = 0/257 (0%) Strand=Plus/Minus Query 2 ACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 61 ||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 14037 ACTCGCTGGCTCAGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 13978 Query 62 CCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGCC 121 |||||||||||||||||||||| | |||| | ||| | ||||||||||||||| | | Sbjct 13977 CCTGTTATTGCCTCAAACTTCCGTCGGCTAAACGCCGACAGTCCCTCTAAGAAGTCGACG 13918 Query 122 ACCAACCATAGTCGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAA 181 |||| || || || | |||||||||||||||||||||||||||||||||||||||| Sbjct 13917 ACCAGCCGGAGCCGGCCTGACTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAA 13858 Query 182 CCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAA 241 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 13857 CCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAA 13798 Query 242 AGAGCTATCAATCTGTC 258 ||||||||||||||||| Sbjct 13797 AGAGCTATCAATCTGTC 13781 >seq26 Length=18679 Score = 365 bits (404), Expect = 7e-99 Identities = 235/257 (91%), Gaps = 0/257 (0%) Strand=Plus/Plus Query 2 ACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 61 ||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 931 ACTCGCTGGCTCAGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 990 Query 62 CCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGCC 121 |||||||||||||||||||||| | |||| | ||| | ||||||||||||||| | | Sbjct 991 CCTGTTATTGCCTCAAACTTCCGTCGGCTAAACGCCGACAGTCCCTCTAAGAAGTCGACG 1050 Query 122 ACCAACCATAGTCGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAA 181 |||| || || || | |||||||||||||||||||||||||||||||||||||||| Sbjct 1051 ACCAGCCGGAGCCGGCCTGACTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAA 1110 Query 182 CCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAA 241 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1111 CCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAA 1170 Query 242 AGAGCTATCAATCTGTC 258 ||||||||||||||||| Sbjct 1171 AGAGCTATCAATCTGTC 1187 Score = 365 bits (404), Expect = 7e-99 Identities = 235/257 (91%), Gaps = 0/257 (0%) Strand=Plus/Plus Query 2 ACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 61 ||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 8644 ACTCGCTGGCTCAGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 8703 Query 62 CCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGCC 121 |||||||||||||||||||||| | |||| | ||| | ||||||||||||||| | | Sbjct 8704 CCTGTTATTGCCTCAAACTTCCGTCGGCTAAACGCCGACAGTCCCTCTAAGAAGTCGACG 8763 Query 122 ACCAACCATAGTCGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAA 181 |||| || || || | |||||||||||||||||||||||||||||||||||||||| Sbjct 8764 ACCAGCCGGAGCCGGCCTGACTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAA 8823 Query 182 CCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAA 241 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 8824 CCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAA 8883 Query 242 AGAGCTATCAATCTGTC 258 ||||||||||||||||| Sbjct 8884 AGAGCTATCAATCTGTC 8900 Score = 365 bits (404), Expect = 7e-99 Identities = 235/257 (91%), Gaps = 0/257 (0%) Strand=Plus/Plus Query 2 ACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 61 ||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 16358 ACTCGCTGGCTCAGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 16417 Query 62 CCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGCC 121 |||||||||||||||||||||| | |||| | ||| | ||||||||||||||| | | Sbjct 16418 CCTGTTATTGCCTCAAACTTCCGTCGGCTAAACGCCGACAGTCCCTCTAAGAAGTCGACG 16477 Query 122 ACCAACCATAGTCGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAA 181 |||| || || || | |||||||||||||||||||||||||||||||||||||||| Sbjct 16478 ACCAGCCGGAGCCGGCCTGACTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAA 16537 Query 182 CCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAA 241 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 16538 CCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAA 16597 Query 242 AGAGCTATCAATCTGTC 258 ||||||||||||||||| Sbjct 16598 AGAGCTATCAATCTGTC 16614 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 796799706678