Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Kockovaella_20imperatae_20[genbank_20GCA_5F002102565.1_202017-04-20] 38 sequences; 17,465,713 total letters Query= AAMG01001382.1 Length=124 Score E Sequences producing significant alignments: (Bits) Value seq27 100 2e-19 seq26 100 2e-19 >seq27 Length=18150 Score = 100 bits (110), Expect = 2e-19 Identities = 92/110 (84%), Gaps = 6/110 (5%) Strand=Plus/Minus Query 13 CCGTTCGCCGGGTCCACAAAGCCAATTCCGAAAGTTCTCACTAAGCCATTTCATTCGGTA 72 ||||| ||||| ||| ||| |||| | | || | |||||||||||||| || |||||| Sbjct 6541 CCGTT-GCCGGCTCCCCAATGCCAGTCCGGAGAC--CTCACTAAGCCATT-CAATCGGTA 6486 Query 73 GTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGACGTAATACAACGCAAG 122 ||| ||||| ||||| |||||||||||||||||||||||| |||||| || Sbjct 6485 GTA-GCGACAGGCGGTGTGTACAAAGGGCAGGGACGTAAT-CAACGCGAG 6438 Score = 100 bits (110), Expect = 2e-19 Identities = 92/110 (84%), Gaps = 6/110 (5%) Strand=Plus/Minus Query 13 CCGTTCGCCGGGTCCACAAAGCCAATTCCGAAAGTTCTCACTAAGCCATTTCATTCGGTA 72 ||||| ||||| ||| ||| |||| | | || | |||||||||||||| || |||||| Sbjct 14255 CCGTT-GCCGGCTCCCCAATGCCAGTCCGGAGAC--CTCACTAAGCCATT-CAATCGGTA 14200 Query 73 GTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGACGTAATACAACGCAAG 122 ||| ||||| ||||| |||||||||||||||||||||||| |||||| || Sbjct 14199 GTA-GCGACAGGCGGTGTGTACAAAGGGCAGGGACGTAAT-CAACGCGAG 14152 >seq26 Length=18679 Score = 100 bits (110), Expect = 2e-19 Identities = 92/110 (84%), Gaps = 6/110 (5%) Strand=Plus/Plus Query 13 CCGTTCGCCGGGTCCACAAAGCCAATTCCGAAAGTTCTCACTAAGCCATTTCATTCGGTA 72 ||||| ||||| ||| ||| |||| | | || | |||||||||||||| || |||||| Sbjct 713 CCGTT-GCCGGCTCCCCAATGCCAGTCCGGAGAC--CTCACTAAGCCATT-CAATCGGTA 768 Query 73 GTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGACGTAATACAACGCAAG 122 ||| ||||| ||||| |||||||||||||||||||||||| |||||| || Sbjct 769 GTA-GCGACAGGCGGTGTGTACAAAGGGCAGGGACGTAAT-CAACGCGAG 816 Score = 100 bits (110), Expect = 2e-19 Identities = 92/110 (84%), Gaps = 6/110 (5%) Strand=Plus/Plus Query 13 CCGTTCGCCGGGTCCACAAAGCCAATTCCGAAAGTTCTCACTAAGCCATTTCATTCGGTA 72 ||||| ||||| ||| ||| |||| | | || | |||||||||||||| || |||||| Sbjct 8426 CCGTT-GCCGGCTCCCCAATGCCAGTCCGGAGAC--CTCACTAAGCCATT-CAATCGGTA 8481 Query 73 GTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGACGTAATACAACGCAAG 122 ||| ||||| ||||| |||||||||||||||||||||||| |||||| || Sbjct 8482 GTA-GCGACAGGCGGTGTGTACAAAGGGCAGGGACGTAAT-CAACGCGAG 8529 Score = 100 bits (110), Expect = 2e-19 Identities = 92/110 (84%), Gaps = 6/110 (5%) Strand=Plus/Plus Query 13 CCGTTCGCCGGGTCCACAAAGCCAATTCCGAAAGTTCTCACTAAGCCATTTCATTCGGTA 72 ||||| ||||| ||| ||| |||| | | || | |||||||||||||| || |||||| Sbjct 16140 CCGTT-GCCGGCTCCCCAATGCCAGTCCGGAGAC--CTCACTAAGCCATT-CAATCGGTA 16195 Query 73 GTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGACGTAATACAACGCAAG 122 ||| ||||| ||||| |||||||||||||||||||||||| |||||| || Sbjct 16196 GTA-GCGACAGGCGGTGTGTACAAAGGGCAGGGACGTAAT-CAACGCGAG 16243 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 300799892840