Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Kockovaella_20imperatae_20[genbank_20GCA_5F002102565.1_202017-04-20] 38 sequences; 17,465,713 total letters Query= AAMG01002186.1 Length=328 Score E Sequences producing significant alignments: (Bits) Value seq27 443 4e-122 seq26 443 4e-122 >seq27 Length=18150 Score = 443 bits (490), Expect = 4e-122 Identities = 285/310 (92%), Gaps = 1/310 (0%) Strand=Plus/Plus Query 20 GAGCGAGACCTTAACCTGCTAAATAGCCAGGCCCGCTTTGGCGGGTCGCCGGCTTCTTAG 79 || ||||||||||||||||||||||| |||||| ||| ||| ||||| || |||||||| Sbjct 6158 GAACGAGACCTTAACCTGCTAAATAGTCAGGCCGGCTCCGGCTGGTCGTCGACTTCTTAG 6217 Query 80 AGGGACTATCGGC-TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTGATGCCCTT 138 ||||||| ||||| | |||||| |||||||||||||||||||||||||||||||||||| Sbjct 6218 AGGGACTGTCGGCGTTTAGCCGACGGAAGTTTGAGGCAATAACAGGTCTGTGATGCCCTT 6277 Query 139 AGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCACCTTGGCC 198 ||||||||||||||||||||||||||||||||| |||||| |||||||||||||||| || Sbjct 6278 AGATGTTCTGGGCCGCACGCGCGCTACACTGACTGAGCCAGCGAGTTCATCACCTTGACC 6337 Query 199 GGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTGCAATTATT 258 | |||||||||||||||||| |||||| ||||||||||||||||||||||||||||||| Sbjct 6338 GAGAGGTCTGGGTAATCTTGTGAAACTCAGTCGTGCTGGGGATAGAGCATTGCAATTATT 6397 Query 259 GCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATTACGTCCCT 318 ||||||||||||||||| ||||||||||| | ||||||| | |||||||||||||||||| Sbjct 6398 GCTCTTCAACGAGGAATACCTAGTAAGCGTGAGTCATCAACTCGCGTTGATTACGTCCCT 6457 Query 319 GCCCTTTGTA 328 |||||||||| Sbjct 6458 GCCCTTTGTA 6467 Score = 443 bits (490), Expect = 4e-122 Identities = 285/310 (92%), Gaps = 1/310 (0%) Strand=Plus/Plus Query 20 GAGCGAGACCTTAACCTGCTAAATAGCCAGGCCCGCTTTGGCGGGTCGCCGGCTTCTTAG 79 || ||||||||||||||||||||||| |||||| ||| ||| ||||| || |||||||| Sbjct 13872 GAACGAGACCTTAACCTGCTAAATAGTCAGGCCGGCTCCGGCTGGTCGTCGACTTCTTAG 13931 Query 80 AGGGACTATCGGC-TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTGATGCCCTT 138 ||||||| ||||| | |||||| |||||||||||||||||||||||||||||||||||| Sbjct 13932 AGGGACTGTCGGCGTTTAGCCGACGGAAGTTTGAGGCAATAACAGGTCTGTGATGCCCTT 13991 Query 139 AGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCACCTTGGCC 198 ||||||||||||||||||||||||||||||||| |||||| |||||||||||||||| || Sbjct 13992 AGATGTTCTGGGCCGCACGCGCGCTACACTGACTGAGCCAGCGAGTTCATCACCTTGACC 14051 Query 199 GGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTGCAATTATT 258 | |||||||||||||||||| |||||| ||||||||||||||||||||||||||||||| Sbjct 14052 GAGAGGTCTGGGTAATCTTGTGAAACTCAGTCGTGCTGGGGATAGAGCATTGCAATTATT 14111 Query 259 GCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATTACGTCCCT 318 ||||||||||||||||| ||||||||||| | ||||||| | |||||||||||||||||| Sbjct 14112 GCTCTTCAACGAGGAATACCTAGTAAGCGTGAGTCATCAACTCGCGTTGATTACGTCCCT 14171 Query 319 GCCCTTTGTA 328 |||||||||| Sbjct 14172 GCCCTTTGTA 14181 >seq26 Length=18679 Score = 443 bits (490), Expect = 4e-122 Identities = 285/310 (92%), Gaps = 1/310 (0%) Strand=Plus/Minus Query 20 GAGCGAGACCTTAACCTGCTAAATAGCCAGGCCCGCTTTGGCGGGTCGCCGGCTTCTTAG 79 || ||||||||||||||||||||||| |||||| ||| ||| ||||| || |||||||| Sbjct 1096 GAACGAGACCTTAACCTGCTAAATAGTCAGGCCGGCTCCGGCTGGTCGTCGACTTCTTAG 1037 Query 80 AGGGACTATCGGC-TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTGATGCCCTT 138 ||||||| ||||| | |||||| |||||||||||||||||||||||||||||||||||| Sbjct 1036 AGGGACTGTCGGCGTTTAGCCGACGGAAGTTTGAGGCAATAACAGGTCTGTGATGCCCTT 977 Query 139 AGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCACCTTGGCC 198 ||||||||||||||||||||||||||||||||| |||||| |||||||||||||||| || Sbjct 976 AGATGTTCTGGGCCGCACGCGCGCTACACTGACTGAGCCAGCGAGTTCATCACCTTGACC 917 Query 199 GGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTGCAATTATT 258 | |||||||||||||||||| |||||| ||||||||||||||||||||||||||||||| Sbjct 916 GAGAGGTCTGGGTAATCTTGTGAAACTCAGTCGTGCTGGGGATAGAGCATTGCAATTATT 857 Query 259 GCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATTACGTCCCT 318 ||||||||||||||||| ||||||||||| | ||||||| | |||||||||||||||||| Sbjct 856 GCTCTTCAACGAGGAATACCTAGTAAGCGTGAGTCATCAACTCGCGTTGATTACGTCCCT 797 Query 319 GCCCTTTGTA 328 |||||||||| Sbjct 796 GCCCTTTGTA 787 Score = 443 bits (490), Expect = 4e-122 Identities = 285/310 (92%), Gaps = 1/310 (0%) Strand=Plus/Minus Query 20 GAGCGAGACCTTAACCTGCTAAATAGCCAGGCCCGCTTTGGCGGGTCGCCGGCTTCTTAG 79 || ||||||||||||||||||||||| |||||| ||| ||| ||||| || |||||||| Sbjct 8809 GAACGAGACCTTAACCTGCTAAATAGTCAGGCCGGCTCCGGCTGGTCGTCGACTTCTTAG 8750 Query 80 AGGGACTATCGGC-TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTGATGCCCTT 138 ||||||| ||||| | |||||| |||||||||||||||||||||||||||||||||||| Sbjct 8749 AGGGACTGTCGGCGTTTAGCCGACGGAAGTTTGAGGCAATAACAGGTCTGTGATGCCCTT 8690 Query 139 AGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCACCTTGGCC 198 ||||||||||||||||||||||||||||||||| |||||| |||||||||||||||| || Sbjct 8689 AGATGTTCTGGGCCGCACGCGCGCTACACTGACTGAGCCAGCGAGTTCATCACCTTGACC 8630 Query 199 GGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTGCAATTATT 258 | |||||||||||||||||| |||||| ||||||||||||||||||||||||||||||| Sbjct 8629 GAGAGGTCTGGGTAATCTTGTGAAACTCAGTCGTGCTGGGGATAGAGCATTGCAATTATT 8570 Query 259 GCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATTACGTCCCT 318 ||||||||||||||||| ||||||||||| | ||||||| | |||||||||||||||||| Sbjct 8569 GCTCTTCAACGAGGAATACCTAGTAAGCGTGAGTCATCAACTCGCGTTGATTACGTCCCT 8510 Query 319 GCCCTTTGTA 328 |||||||||| Sbjct 8509 GCCCTTTGTA 8500 Score = 443 bits (490), Expect = 4e-122 Identities = 285/310 (92%), Gaps = 1/310 (0%) Strand=Plus/Minus Query 20 GAGCGAGACCTTAACCTGCTAAATAGCCAGGCCCGCTTTGGCGGGTCGCCGGCTTCTTAG 79 || ||||||||||||||||||||||| |||||| ||| ||| ||||| || |||||||| Sbjct 16523 GAACGAGACCTTAACCTGCTAAATAGTCAGGCCGGCTCCGGCTGGTCGTCGACTTCTTAG 16464 Query 80 AGGGACTATCGGC-TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTGATGCCCTT 138 ||||||| ||||| | |||||| |||||||||||||||||||||||||||||||||||| Sbjct 16463 AGGGACTGTCGGCGTTTAGCCGACGGAAGTTTGAGGCAATAACAGGTCTGTGATGCCCTT 16404 Query 139 AGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCACCTTGGCC 198 ||||||||||||||||||||||||||||||||| |||||| |||||||||||||||| || Sbjct 16403 AGATGTTCTGGGCCGCACGCGCGCTACACTGACTGAGCCAGCGAGTTCATCACCTTGACC 16344 Query 199 GGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTGCAATTATT 258 | |||||||||||||||||| |||||| ||||||||||||||||||||||||||||||| Sbjct 16343 GAGAGGTCTGGGTAATCTTGTGAAACTCAGTCGTGCTGGGGATAGAGCATTGCAATTATT 16284 Query 259 GCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATTACGTCCCT 318 ||||||||||||||||| ||||||||||| | ||||||| | |||||||||||||||||| Sbjct 16283 GCTCTTCAACGAGGAATACCTAGTAAGCGTGAGTCATCAACTCGCGTTGATTACGTCCCT 16224 Query 319 GCCCTTTGTA 328 |||||||||| Sbjct 16223 GCCCTTTGTA 16214 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 947199640064