Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Kockovaella_20imperatae_20[genbank_20GCA_5F002102565.1_202017-04-20] 38 sequences; 17,465,713 total letters Query= AAMG01002244.1 Length=504 Score E Sequences producing significant alignments: (Bits) Value seq29 746 0.0 seq27 746 0.0 seq26 746 0.0 >seq29 Length=1906 Score = 746 bits (826), Expect = 0.0 Identities = 472/507 (93%), Gaps = 3/507 (1%) Strand=Plus/Minus Query 1 GTACTCATTCCAATTACAAGACCCAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCT 60 ||||||||||||||||||||||||| || ||||||||| |||||||||||||||||| Sbjct 1212 GTACTCATTCCAATTACAAGACCCATTAGGGCCCTGTATTGTTATTTATTGTCACTACCT 1153 Query 61 CCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTT 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1152 CCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTT 1093 Query 121 TCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTA 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1092 TCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTA 1033 Query 181 GGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGCT 240 |||| ||||||||||||||||||||||||||||||| ||||||||||| |||||||||| Sbjct 1032 GGCCTCTATCCTACCATCGAAAGTTGATAGGGCAGATATTTGAATGAAGCATCGCCGGCG 973 Query 241 CAAGGCCATGCGATTCGTTAAGTTATTATGAATCACCAAGGAGCCCCGAAGGGCGTTGGT 300 ||||||||||||||||| ||||||| ||||||||||||| || | || | ||||| Sbjct 972 CAAGGCCATGCGATTCGAGAAGTTATCATGAATCACCAAGAAGGGCGTAAACCCATTGGT 913 Query 301 TTTTTATCTAATAAATACACCCCTTCC-GAAGTCGGGG-TTTTTAGCATGTATTAGCTCT 358 ||||||||||||||||||||||||||| |||||||||| |||| |||||||||||||||| Sbjct 912 TTTTTATCTAATAAATACACCCCTTCCGGAAGTCGGGGCTTTTCAGCATGTATTAGCTCT 853 Query 359 AGAATTACCACGGTTATCCATGTAGTAAGGTACTATCAAATAAACGATAACTGATTTAAT 418 ||||||||||| ||||||||||||| ||| ||| ||||||||||| |||||||||||||| Sbjct 852 AGAATTACCACAGTTATCCATGTAGCAAGATACCATCAAATAAACTATAACTGATTTAAT 793 Query 419 GAGCCATTCGCAGTTTCACTGTAT-AGATTGCTTATACTTAGACATGCATGGCTTAATCT 477 ||||||||||||||||||| |||| | ||| |||||||||||||||||||||||||||| Sbjct 792 GAGCCATTCGCAGTTTCACCGTATGAATTTGTTTATACTTAGACATGCATGGCTTAATCT 733 Query 478 TTGAGACAAGCATATGACTACTGGCAG 504 ||||||||||||||||||||||||||| Sbjct 732 TTGAGACAAGCATATGACTACTGGCAG 706 >seq27 Length=18150 Score = 746 bits (826), Expect = 0.0 Identities = 472/507 (93%), Gaps = 3/507 (1%) Strand=Plus/Minus Query 1 GTACTCATTCCAATTACAAGACCCAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCT 60 ||||||||||||||||||||||||| || ||||||||| |||||||||||||||||| Sbjct 5353 GTACTCATTCCAATTACAAGACCCATTAGGGCCCTGTATTGTTATTTATTGTCACTACCT 5294 Query 61 CCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTT 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 5293 CCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTT 5234 Query 121 TCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTA 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 5233 TCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTA 5174 Query 181 GGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGCT 240 |||| ||||||||||||||||||||||||||||||| ||||||||||| |||||||||| Sbjct 5173 GGCCTCTATCCTACCATCGAAAGTTGATAGGGCAGATATTTGAATGAAGCATCGCCGGCG 5114 Query 241 CAAGGCCATGCGATTCGTTAAGTTATTATGAATCACCAAGGAGCCCCGAAGGGCGTTGGT 300 ||||||||||||||||| ||||||| ||||||||||||| || | || | ||||| Sbjct 5113 CAAGGCCATGCGATTCGAGAAGTTATCATGAATCACCAAGAAGGGCGTAAACCCATTGGT 5054 Query 301 TTTTTATCTAATAAATACACCCCTTCC-GAAGTCGGGG-TTTTTAGCATGTATTAGCTCT 358 ||||||||||||||||||||||||||| |||||||||| |||| |||||||||||||||| Sbjct 5053 TTTTTATCTAATAAATACACCCCTTCCGGAAGTCGGGGCTTTTCAGCATGTATTAGCTCT 4994 Query 359 AGAATTACCACGGTTATCCATGTAGTAAGGTACTATCAAATAAACGATAACTGATTTAAT 418 ||||||||||| ||||||||||||| ||| ||| ||||||||||| |||||||||||||| Sbjct 4993 AGAATTACCACAGTTATCCATGTAGCAAGATACCATCAAATAAACTATAACTGATTTAAT 4934 Query 419 GAGCCATTCGCAGTTTCACTGTAT-AGATTGCTTATACTTAGACATGCATGGCTTAATCT 477 ||||||||||||||||||| |||| | ||| |||||||||||||||||||||||||||| Sbjct 4933 GAGCCATTCGCAGTTTCACCGTATGAATTTGTTTATACTTAGACATGCATGGCTTAATCT 4874 Query 478 TTGAGACAAGCATATGACTACTGGCAG 504 ||||||||||||||||||||||||||| Sbjct 4873 TTGAGACAAGCATATGACTACTGGCAG 4847 Score = 746 bits (826), Expect = 0.0 Identities = 472/507 (93%), Gaps = 3/507 (1%) Strand=Plus/Minus Query 1 GTACTCATTCCAATTACAAGACCCAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCT 60 ||||||||||||||||||||||||| || ||||||||| |||||||||||||||||| Sbjct 13067 GTACTCATTCCAATTACAAGACCCATTAGGGCCCTGTATTGTTATTTATTGTCACTACCT 13008 Query 61 CCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTT 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 13007 CCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTT 12948 Query 121 TCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTA 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 12947 TCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTA 12888 Query 181 GGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGCT 240 |||| ||||||||||||||||||||||||||||||| ||||||||||| |||||||||| Sbjct 12887 GGCCTCTATCCTACCATCGAAAGTTGATAGGGCAGATATTTGAATGAAGCATCGCCGGCG 12828 Query 241 CAAGGCCATGCGATTCGTTAAGTTATTATGAATCACCAAGGAGCCCCGAAGGGCGTTGGT 300 ||||||||||||||||| ||||||| ||||||||||||| || | || | ||||| Sbjct 12827 CAAGGCCATGCGATTCGAGAAGTTATCATGAATCACCAAGAAGGGCGTAAACCCATTGGT 12768 Query 301 TTTTTATCTAATAAATACACCCCTTCC-GAAGTCGGGG-TTTTTAGCATGTATTAGCTCT 358 ||||||||||||||||||||||||||| |||||||||| |||| |||||||||||||||| Sbjct 12767 TTTTTATCTAATAAATACACCCCTTCCGGAAGTCGGGGCTTTTCAGCATGTATTAGCTCT 12708 Query 359 AGAATTACCACGGTTATCCATGTAGTAAGGTACTATCAAATAAACGATAACTGATTTAAT 418 ||||||||||| ||||||||||||| ||| ||| ||||||||||| |||||||||||||| Sbjct 12707 AGAATTACCACAGTTATCCATGTAGCAAGATACCATCAAATAAACTATAACTGATTTAAT 12648 Query 419 GAGCCATTCGCAGTTTCACTGTAT-AGATTGCTTATACTTAGACATGCATGGCTTAATCT 477 ||||||||||||||||||| |||| | ||| |||||||||||||||||||||||||||| Sbjct 12647 GAGCCATTCGCAGTTTCACCGTATGAATTTGTTTATACTTAGACATGCATGGCTTAATCT 12588 Query 478 TTGAGACAAGCATATGACTACTGGCAG 504 ||||||||||||||||||||||||||| Sbjct 12587 TTGAGACAAGCATATGACTACTGGCAG 12561 >seq26 Length=18679 Score = 746 bits (826), Expect = 0.0 Identities = 472/507 (93%), Gaps = 3/507 (1%) Strand=Plus/Plus Query 1 GTACTCATTCCAATTACAAGACCCAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCT 60 ||||||||||||||||||||||||| || ||||||||| |||||||||||||||||| Sbjct 1901 GTACTCATTCCAATTACAAGACCCATTAGGGCCCTGTATTGTTATTTATTGTCACTACCT 1960 Query 61 CCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTT 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1961 CCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTT 2020 Query 121 TCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTA 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2021 TCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTA 2080 Query 181 GGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGCT 240 |||| ||||||||||||||||||||||||||||||| ||||||||||| |||||||||| Sbjct 2081 GGCCTCTATCCTACCATCGAAAGTTGATAGGGCAGATATTTGAATGAAGCATCGCCGGCG 2140 Query 241 CAAGGCCATGCGATTCGTTAAGTTATTATGAATCACCAAGGAGCCCCGAAGGGCGTTGGT 300 ||||||||||||||||| ||||||| ||||||||||||| || | || | ||||| Sbjct 2141 CAAGGCCATGCGATTCGAGAAGTTATCATGAATCACCAAGAAGGGCGTAAACCCATTGGT 2200 Query 301 TTTTTATCTAATAAATACACCCCTTCC-GAAGTCGGGG-TTTTTAGCATGTATTAGCTCT 358 ||||||||||||||||||||||||||| |||||||||| |||| |||||||||||||||| Sbjct 2201 TTTTTATCTAATAAATACACCCCTTCCGGAAGTCGGGGCTTTTCAGCATGTATTAGCTCT 2260 Query 359 AGAATTACCACGGTTATCCATGTAGTAAGGTACTATCAAATAAACGATAACTGATTTAAT 418 ||||||||||| ||||||||||||| ||| ||| ||||||||||| |||||||||||||| Sbjct 2261 AGAATTACCACAGTTATCCATGTAGCAAGATACCATCAAATAAACTATAACTGATTTAAT 2320 Query 419 GAGCCATTCGCAGTTTCACTGTAT-AGATTGCTTATACTTAGACATGCATGGCTTAATCT 477 ||||||||||||||||||| |||| | ||| |||||||||||||||||||||||||||| Sbjct 2321 GAGCCATTCGCAGTTTCACCGTATGAATTTGTTTATACTTAGACATGCATGGCTTAATCT 2380 Query 478 TTGAGACAAGCATATGACTACTGGCAG 504 ||||||||||||||||||||||||||| Sbjct 2381 TTGAGACAAGCATATGACTACTGGCAG 2407 Score = 746 bits (826), Expect = 0.0 Identities = 472/507 (93%), Gaps = 3/507 (1%) Strand=Plus/Plus Query 1 GTACTCATTCCAATTACAAGACCCAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCT 60 ||||||||||||||||||||||||| || ||||||||| |||||||||||||||||| Sbjct 9614 GTACTCATTCCAATTACAAGACCCATTAGGGCCCTGTATTGTTATTTATTGTCACTACCT 9673 Query 61 CCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTT 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 9674 CCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTT 9733 Query 121 TCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTA 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 9734 TCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTA 9793 Query 181 GGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGCT 240 |||| ||||||||||||||||||||||||||||||| ||||||||||| |||||||||| Sbjct 9794 GGCCTCTATCCTACCATCGAAAGTTGATAGGGCAGATATTTGAATGAAGCATCGCCGGCG 9853 Query 241 CAAGGCCATGCGATTCGTTAAGTTATTATGAATCACCAAGGAGCCCCGAAGGGCGTTGGT 300 ||||||||||||||||| ||||||| ||||||||||||| || | || | ||||| Sbjct 9854 CAAGGCCATGCGATTCGAGAAGTTATCATGAATCACCAAGAAGGGCGTAAACCCATTGGT 9913 Query 301 TTTTTATCTAATAAATACACCCCTTCC-GAAGTCGGGG-TTTTTAGCATGTATTAGCTCT 358 ||||||||||||||||||||||||||| |||||||||| |||| |||||||||||||||| Sbjct 9914 TTTTTATCTAATAAATACACCCCTTCCGGAAGTCGGGGCTTTTCAGCATGTATTAGCTCT 9973 Query 359 AGAATTACCACGGTTATCCATGTAGTAAGGTACTATCAAATAAACGATAACTGATTTAAT 418 ||||||||||| ||||||||||||| ||| ||| ||||||||||| |||||||||||||| Sbjct 9974 AGAATTACCACAGTTATCCATGTAGCAAGATACCATCAAATAAACTATAACTGATTTAAT 10033 Query 419 GAGCCATTCGCAGTTTCACTGTAT-AGATTGCTTATACTTAGACATGCATGGCTTAATCT 477 ||||||||||||||||||| |||| | ||| |||||||||||||||||||||||||||| Sbjct 10034 GAGCCATTCGCAGTTTCACCGTATGAATTTGTTTATACTTAGACATGCATGGCTTAATCT 10093 Query 478 TTGAGACAAGCATATGACTACTGGCAG 504 ||||||||||||||||||||||||||| Sbjct 10094 TTGAGACAAGCATATGACTACTGGCAG 10120 Score = 746 bits (826), Expect = 0.0 Identities = 472/507 (93%), Gaps = 3/507 (1%) Strand=Plus/Plus Query 1 GTACTCATTCCAATTACAAGACCCAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCT 60 ||||||||||||||||||||||||| || ||||||||| |||||||||||||||||| Sbjct 17328 GTACTCATTCCAATTACAAGACCCATTAGGGCCCTGTATTGTTATTTATTGTCACTACCT 17387 Query 61 CCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTT 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 17388 CCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTT 17447 Query 121 TCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTA 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 17448 TCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTA 17507 Query 181 GGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGCT 240 |||| ||||||||||||||||||||||||||||||| ||||||||||| |||||||||| Sbjct 17508 GGCCTCTATCCTACCATCGAAAGTTGATAGGGCAGATATTTGAATGAAGCATCGCCGGCG 17567 Query 241 CAAGGCCATGCGATTCGTTAAGTTATTATGAATCACCAAGGAGCCCCGAAGGGCGTTGGT 300 ||||||||||||||||| ||||||| ||||||||||||| || | || | ||||| Sbjct 17568 CAAGGCCATGCGATTCGAGAAGTTATCATGAATCACCAAGAAGGGCGTAAACCCATTGGT 17627 Query 301 TTTTTATCTAATAAATACACCCCTTCC-GAAGTCGGGG-TTTTTAGCATGTATTAGCTCT 358 ||||||||||||||||||||||||||| |||||||||| |||| |||||||||||||||| Sbjct 17628 TTTTTATCTAATAAATACACCCCTTCCGGAAGTCGGGGCTTTTCAGCATGTATTAGCTCT 17687 Query 359 AGAATTACCACGGTTATCCATGTAGTAAGGTACTATCAAATAAACGATAACTGATTTAAT 418 ||||||||||| ||||||||||||| ||| ||| ||||||||||| |||||||||||||| Sbjct 17688 AGAATTACCACAGTTATCCATGTAGCAAGATACCATCAAATAAACTATAACTGATTTAAT 17747 Query 419 GAGCCATTCGCAGTTTCACTGTAT-AGATTGCTTATACTTAGACATGCATGGCTTAATCT 477 ||||||||||||||||||| |||| | ||| |||||||||||||||||||||||||||| Sbjct 17748 GAGCCATTCGCAGTTTCACCGTATGAATTTGTTTATACTTAGACATGCATGGCTTAATCT 17807 Query 478 TTGAGACAAGCATATGACTACTGGCAG 504 ||||||||||||||||||||||||||| Sbjct 17808 TTGAGACAAGCATATGACTACTGGCAG 17834 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1510399426048