Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Kockovaella_20imperatae_20[genbank_20GCA_5F002102565.1_202017-04-20] 38 sequences; 17,465,713 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq33 273 2e-68 >seq33 Length=1453386 Score = 273 bits (302), Expect = 2e-68 Identities = 486/700 (69%), Gaps = 22/700 (3%) Strand=Plus/Minus Query 65993 ACAAACTTGGGAAGGGCAAGAGATGCGAGGTTGCAGACAGCTATCTCGTCAGGAGCGGTA 66052 ||||| |||||| || || || || | ||||||||| || | |||||||||||| | Sbjct 850813 ACAAAGGCGGGAAGAGCGAGCGAGGCCAAGTTGCAGACGGCGACCTCGTCAGGAGCAGAG 850754 Query 66053 TACTCGACAATTTCGGTGCACAGATTACTGCAGCGT--ATGGTGCCCAAATTCTGTTGAT 66110 || || | |||||||| |||| || | || | ||||| |||| | || ||| | Sbjct 850753 TATTCAATGATTTCGGTACACAAGTTG--GAAGACTTGATGGTTCCCAGGTGCTTTTGGT 850696 Query 66111 TACTCTTGCGATT-GCATGCATCCTTGTACATCATGTACGGAGTGCCGGTCTCAACTTGG 66169 | |||| ||| ||| ||||||||||| | |||||| ||||| |||||||| ||| Sbjct 850695 TGGACTTGGCATTTGCA-GCATCCTTGTAAAGCATGTAGGGAGTACCGGTCTCGGTCTGG 850637 Query 66170 GACTCAATGATGGCGTGCCAAAGAGCGCGTGCCTTCACCGTACGTACCGCCCTA-----C 66224 | ||||| ||||||| ||| || | ||||| | || | | | ||||| | Sbjct 850636 GCCTCAAGGATGGCGAACCAGAGTTTCTGAGCCTTGATGGT-CTTTCGGCCCTTGCCGGC 850578 Query 66225 CTTTGCGTTCGTAATGTTCGTAGAGGTGTTCGAAGGATTCACC-CCAT--ACTTCGGACA 66281 |||| ||||| ||| ||||| ||| || ||| | |||| || |||| | Sbjct 850577 CTTT----TCGTAGCCTTCATAGAGTGCTTCAAA---TTCGGCTCCATGGACATCGGCGA 850525 Query 66282 GACATGGACACTTGTGTGGACACATCAGCGACCAATCACCATCCTGTTCTACACGACGCA 66341 ||| || || | | |||||||| || | ||| ||||| || ||| || || || Sbjct 850524 GACCAGGGCATTCGGCAGGACACATGAGGGTCCAGTCACCGTCGGCTTCGACTCGCTTCA 850465 Query 66342 TAAATAGATCAGGTATCCAGAGGGCGTAGAAGAGATCGCGTGCTCGTTGCTCCTCAATGC 66401 | || || || |||||||||||||||||||| ||||| || ||||| ||| || | | Sbjct 850464 TGAACAGGTCGGGTATCCAGAGGGCGTAGAAAAGATCACGGGCTCGGACCTCTTCCTTAC 850405 Query 66402 CGTGATTTTTGCGCAAGTCGAGGAACTCAAAGATGTCGGCATGCCATGGTTCCAGGTAGA 66461 ||||||| || |||||||||||||| ||||||| ||||| ||||| || || || |||| Sbjct 850404 CGTGATTCTTTCGCAAGTCGAGGAAGTCAAAGACATCGGCGTGCCAGGGCTCTAGATAGA 850345 Query 66462 TGGCGAACGAGCCCATACGTTTGCCGCCACCTTGGTCGACGTAGCGAGCGACATTGTTGA 66521 |||| || | || ||| ||| ||||| ||||||||||| |||||| || | Sbjct 850344 TGGCAAAGGCACCAGGACGCTTGTTTCCACCCTGGTCGACGTAACGAGCGGTGGCGTCAA 850285 Query 66522 AGACACGCAACATCGGTACGAGCCCGTTAGATTTGCCATTGGTGCCGTCGATGGGGGATC 66581 || | || | ||| ||||||| ||||| || | || ||||| ||| | ||| ||| | Sbjct 850284 AGGCTCGGAGCATAGGTACGATACCGTTCGAGTATCCGTTGGTACCGGCAATGTAGGAGC 850225 Query 66582 CTCGTGCCCGTATATCGTGAACATTCAGACCAATACCACCGGCCGTCTTCGAGATGGCAG 66641 | || || || | ||||| | || || ||||| ||||| ||||| ||||| || Sbjct 850224 CCTTGGCTCGAATGTTGTGAATGTGAAGTCCGATACCTCCGGCAGTCTTGGAGATCTGAG 850165 Query 66642 CACAATCGGCCACTGTCCGGAATATGCCGTCAATGGAGTC 66681 | || || ||| | | ||||||||||||||||| Sbjct 850164 CGCAGGTCTTCAAAGTCTCGTAGATGCCGTCAATGGAGTC 850125 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397567815876320