Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lentinula_20edodes_20[genbank_20GCA_5F001562095.1_202016-02-16] 31 sequences; 46,106,741 total letters Query= AAMG01001382.1 Length=124 Score E Sequences producing significant alignments: (Bits) Value seq26 122 5e-26 seq18 122 5e-26 >seq26 Length=3662990 Score = 122 bits (134), Expect = 5e-26 Identities = 105/124 (85%), Gaps = 6/124 (5%) Strand=Plus/Minus Query 1 AGCGACGTAGCCCCGTTCGCCGGGTCCACAAAGCCAATTCCGAAAGTTCTCACTAAGCCA 60 |||||| || ||||| ||||| ||| | |||||||| | || | |||||||||||| Sbjct 941740 AGCGACAGAGTGCCGTT-GCCGGCTCCCCGAAGCCAATCCGGAGAC--CTCACTAAGCCA 941684 Query 61 TTTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGACGTAATACAACGCA 120 || || ||||||||| ||||||||||| |||||||||||||||||||||||| ||||||| Sbjct 941683 TT-CAATCGGTAGTA-GCGACGGGCGGTGTGTACAAAGGGCAGGGACGTAAT-CAACGCA 941627 Query 121 AGCT 124 |||| Sbjct 941626 AGCT 941623 >seq18 Length=176572 Score = 122 bits (134), Expect = 5e-26 Identities = 105/124 (85%), Gaps = 6/124 (5%) Strand=Plus/Minus Query 1 AGCGACGTAGCCCCGTTCGCCGGGTCCACAAAGCCAATTCCGAAAGTTCTCACTAAGCCA 60 |||||| || ||||| ||||| ||| | |||||||| | || | |||||||||||| Sbjct 30778 AGCGACAGAGTGCCGTT-GCCGGCTCCCCGAAGCCAATCCGGAGAC--CTCACTAAGCCA 30722 Query 61 TTTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGACGTAATACAACGCA 120 || || ||||||||| ||||||||||| |||||||||||||||||||||||| ||||||| Sbjct 30721 TT-CAATCGGTAGTA-GCGACGGGCGGTGTGTACAAAGGGCAGGGACGTAAT-CAACGCA 30665 Query 121 AGCT 124 |||| Sbjct 30664 AGCT 30661 Score = 122 bits (134), Expect = 5e-26 Identities = 105/124 (85%), Gaps = 6/124 (5%) Strand=Plus/Minus Query 1 AGCGACGTAGCCCCGTTCGCCGGGTCCACAAAGCCAATTCCGAAAGTTCTCACTAAGCCA 60 |||||| || ||||| ||||| ||| | |||||||| | || | |||||||||||| Sbjct 40508 AGCGACAGAGTGCCGTT-GCCGGCTCCCCGAAGCCAATCCGGAGAC--CTCACTAAGCCA 40452 Query 61 TTTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGACGTAATACAACGCA 120 || || ||||||||| ||||||||||| |||||||||||||||||||||||| ||||||| Sbjct 40451 TT-CAATCGGTAGTA-GCGACGGGCGGTGTGTACAAAGGGCAGGGACGTAAT-CAACGCA 40395 Query 121 AGCT 124 |||| Sbjct 40394 AGCT 40391 Score = 122 bits (134), Expect = 5e-26 Identities = 105/124 (85%), Gaps = 6/124 (5%) Strand=Plus/Minus Query 1 AGCGACGTAGCCCCGTTCGCCGGGTCCACAAAGCCAATTCCGAAAGTTCTCACTAAGCCA 60 |||||| || ||||| ||||| ||| | |||||||| | || | |||||||||||| Sbjct 49806 AGCGACAGAGTGCCGTT-GCCGGCTCCCCGAAGCCAATCCGGAGAC--CTCACTAAGCCA 49750 Query 61 TTTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGACGTAATACAACGCA 120 || || ||||||||| ||||||||||| |||||||||||||||||||||||| ||||||| Sbjct 49749 TT-CAATCGGTAGTA-GCGACGGGCGGTGTGTACAAAGGGCAGGGACGTAAT-CAACGCA 49693 Query 121 AGCT 124 |||| Sbjct 49692 AGCT 49689 Score = 122 bits (134), Expect = 5e-26 Identities = 105/124 (85%), Gaps = 6/124 (5%) Strand=Plus/Minus Query 1 AGCGACGTAGCCCCGTTCGCCGGGTCCACAAAGCCAATTCCGAAAGTTCTCACTAAGCCA 60 |||||| || ||||| ||||| ||| | |||||||| | || | |||||||||||| Sbjct 59103 AGCGACAGAGTGCCGTT-GCCGGCTCCCCGAAGCCAATCCGGAGAC--CTCACTAAGCCA 59047 Query 61 TTTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGACGTAATACAACGCA 120 || || ||||||||| ||||||||||| |||||||||||||||||||||||| ||||||| Sbjct 59046 TT-CAATCGGTAGTA-GCGACGGGCGGTGTGTACAAAGGGCAGGGACGTAAT-CAACGCA 58990 Query 121 AGCT 124 |||| Sbjct 58989 AGCT 58986 Score = 122 bits (134), Expect = 5e-26 Identities = 105/124 (85%), Gaps = 6/124 (5%) Strand=Plus/Minus Query 1 AGCGACGTAGCCCCGTTCGCCGGGTCCACAAAGCCAATTCCGAAAGTTCTCACTAAGCCA 60 |||||| || ||||| ||||| ||| | |||||||| | || | |||||||||||| Sbjct 83478 AGCGACAGAGTGCCGTT-GCCGGCTCCCCGAAGCCAATCCGGAGAC--CTCACTAAGCCA 83422 Query 61 TTTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGACGTAATACAACGCA 120 || || ||||||||| ||||||||||| |||||||||||||||||||||||| ||||||| Sbjct 83421 TT-CAATCGGTAGTA-GCGACGGGCGGTGTGTACAAAGGGCAGGGACGTAAT-CAACGCA 83365 Query 121 AGCT 124 |||| Sbjct 83364 AGCT 83361 Score = 87.8 bits (96), Expect = 1e-15 Identities = 60/65 (92%), Gaps = 2/65 (3%) Strand=Plus/Plus Query 48 TCTCACTAAGCCATTTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGAC 107 ||||||| ||||||| || ||||||||| ||||||||||| ||||||||||||||||||| Sbjct 18814 TCTCACTGAGCCATT-CAATCGGTAGTA-GCGACGGGCGGTGTGTACAAAGGGCAGGGAC 18871 Query 108 GTAAT 112 ||||| Sbjct 18872 GTAAT 18876 Score = 87.8 bits (96), Expect = 1e-15 Identities = 66/74 (89%), Gaps = 3/74 (4%) Strand=Plus/Minus Query 39 TCCGAAAGTTCTCACTAAGCCATTTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAG 98 |||||| | |||||| ||||||| || ||||||||| ||||||||||| |||||||||| Sbjct 68042 TCCGAAGGC-CTCACTGAGCCATT-CAATCGGTAGTA-GCGACGGGCGGTGTGTACAAAG 67986 Query 99 GGCAGGGACGTAAT 112 |||||||||||||| Sbjct 67985 GGCAGGGACGTAAT 67972 Score = 75.2 bits (82), Expect = 7e-12 Identities = 64/74 (86%), Gaps = 5/74 (7%) Strand=Plus/Minus Query 39 TCCGAAAGTTCTCACTAAGCCATTTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAG 98 |||||| | |||||| ||||||| || ||||||||| ||||||||||| |||||||||| Sbjct 75980 TCCGAAGGC-CTCACTGAGCCATT-CAATCGGTAGTA-GCGACGGGCGGTGTGTACAAAG 75924 Query 99 GGCAGGGACGTAAT 112 |||| |||||||| Sbjct 75923 GGCA--GACGTAAT 75912 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 300799912580