Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lentinula_20edodes_20[genbank_20GCA_5F001562095.1_202016-02-16] 31 sequences; 46,106,741 total letters Query= AAMG01002236.1 Length=287 Score E Sequences producing significant alignments: (Bits) Value seq18 291 1e-76 seq1 100 5e-19 >seq18 Length=176572 Score = 291 bits (322), Expect = 1e-76 Identities = 239/282 (85%), Gaps = 8/282 (3%) Strand=Plus/Minus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 ||||||||||||||| || |||||| ||||||||||||||||||||||||||||||||| Sbjct 15377 GTACGAGAGGAACCGTTGA-TTCAGA-TAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 15320 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120 ||||||| |||||||||||| ||||||||||||||||||||||||||||||||| |||| Sbjct 15319 GCCGCGACGCTACCATCTGCCGGATTATGGCTGAACGCCTCTAAGTCAGAATCCGTGCCG 15260 Query 121 GAACGGGGTGATTCTCTCCTGCACATCGTAGTCGGATACGAATAGGCTTC--GGCCCCGA 178 ||||| || |||| || |||| ||||||| |||||||||||||| || |||| || Sbjct 15259 GAACGCGGCGATTTCGCCCCGCACGTCGTAGTTGGATACGAATAGGCCTCCGGGCCACGC 15200 Query 179 ACCTTAGCAGGCCGGCAACGGGCGTCCCGCG-GAAGCGC-GGGGCGCTCAGCTGGCGGAT 236 |||| ||||||| ||| || |||| || | | ||| | | ||| ||| |||||||||| Sbjct 15199 ACCTCAGCAGGCTGGCGAC-GGCGCCCGGGGAGAAACCCTCGGGGGCT-GGCTGGCGGAT 15142 Query 237 TGCAATTTCACCATGCGCAGGGATAAATCCTTTGCAGACGAC 278 |||||| ||||| |||| |||||| ||||| |||||||||| Sbjct 15141 TGCAATGTCACCTCGCGCGGGGATAGATCCTCTGCAGACGAC 15100 Score = 291 bits (322), Expect = 1e-76 Identities = 239/282 (85%), Gaps = 8/282 (3%) Strand=Plus/Plus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 ||||||||||||||| || |||||| ||||||||||||||||||||||||||||||||| Sbjct 71520 GTACGAGAGGAACCGTTGA-TTCAGA-TAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 71577 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120 ||||||| |||||||||||| ||||||||||||||||||||||||||||||||| |||| Sbjct 71578 GCCGCGACGCTACCATCTGCCGGATTATGGCTGAACGCCTCTAAGTCAGAATCCGTGCCG 71637 Query 121 GAACGGGGTGATTCTCTCCTGCACATCGTAGTCGGATACGAATAGGCTTC--GGCCCCGA 178 ||||| || |||| || |||| ||||||| |||||||||||||| || |||| || Sbjct 71638 GAACGCGGCGATTTCGCCCCGCACGTCGTAGTTGGATACGAATAGGCCTCCGGGCCACGC 71697 Query 179 ACCTTAGCAGGCCGGCAACGGGCGTCCCGCG-GAAGCGC-GGGGCGCTCAGCTGGCGGAT 236 |||| ||||||| ||| || |||| || | | ||| | | ||| ||| |||||||||| Sbjct 71698 ACCTCAGCAGGCTGGCGAC-GGCGCCCGGGGAGAAACCCTCGGGGGCT-GGCTGGCGGAT 71755 Query 237 TGCAATTTCACCATGCGCAGGGATAAATCCTTTGCAGACGAC 278 |||||| ||||| |||| |||||| ||||| |||||||||| Sbjct 71756 TGCAATGTCACCTCGCGCGGGGATAGATCCTCTGCAGACGAC 71797 Score = 282 bits (312), Expect = 7e-74 Identities = 238/282 (84%), Gaps = 9/282 (3%) Strand=Plus/Plus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 ||||||||||||||| || |||||| ||||||||||||||||||||||||||||||||| Sbjct 79533 GTACGAGAGGAACCGTTGA-TTCAGA-TAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 79590 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120 ||||||| |||||||||||| ||||||||||||||||||||||||||||||||| |||| Sbjct 79591 GCCGCGACGCTACCATCTGCCGGATTATGGCTGAACGCCTCTAAGTCAGAATCCGTGCCG 79650 Query 121 GAACGGGGTGATTCTCTCCTGCACATCGTAGTCGGATACGAATAGGCTTC--GGCCCCGA 178 ||||| || |||| || |||| ||||||| ||||||||| |||| || |||| || Sbjct 79651 GAACGCGGCGATTTCGCCCCGCACGTCGTAGTTGGATACGAA-AGGCCTCCGGGCCACGC 79709 Query 179 ACCTTAGCAGGCCGGCAACGGGCGTCCCGCG-GAAGCGC-GGGGCGCTCAGCTGGCGGAT 236 |||| ||||||| ||| || |||| || | | ||| | | ||| ||| |||||||||| Sbjct 79710 ACCTCAGCAGGCTGGCGAC-GGCGCCCGGGGAGAAACCCTCGGGGGCT-GGCTGGCGGAT 79767 Query 237 TGCAATTTCACCATGCGCAGGGATAAATCCTTTGCAGACGAC 278 |||||| ||||| |||| |||||| ||||| |||||||||| Sbjct 79768 TGCAATGTCACCTCGCGCGGGGATAGATCCTCTGCAGACGAC 79809 Score = 134 bits (148), Expect = 2e-29 Identities = 105/123 (85%), Gaps = 2/123 (2%) Strand=Plus/Plus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 ||||||||||||||| | |||||| || ||||| |||||| ||||| || | |||| | Sbjct 34548 GTACGAGAGGAACCGTTCA-TTCAGA-TATTTGGTATTTGCGCCTGTCCGATCGGGCAAT 34605 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120 | |||||||||| |||||||||||||||||||||||||||||||| ||||| || ||| | Sbjct 34606 GGCGCGAAGCTATCATCTGCTGGATTATGGCTGAACGCCTCTAAGCCAGAACCCGTGCTA 34665 Query 121 GAA 123 ||| Sbjct 34666 GAA 34668 Score = 134 bits (148), Expect = 2e-29 Identities = 105/123 (85%), Gaps = 2/123 (2%) Strand=Plus/Plus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 ||||||||||||||| | |||||| || ||||| |||||| ||||| || | |||| | Sbjct 44278 GTACGAGAGGAACCGTTCA-TTCAGA-TATTTGGTATTTGCGCCTGTCCGATCGGGCAAT 44335 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120 | |||||||||| |||||||||||||||||||||||||||||||| ||||| || ||| | Sbjct 44336 GGCGCGAAGCTATCATCTGCTGGATTATGGCTGAACGCCTCTAAGCCAGAACCCGTGCTA 44395 Query 121 GAA 123 ||| Sbjct 44396 GAA 44398 Score = 134 bits (148), Expect = 2e-29 Identities = 105/123 (85%), Gaps = 2/123 (2%) Strand=Plus/Plus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 ||||||||||||||| | |||||| || ||||| |||||| ||||| || | |||| | Sbjct 53575 GTACGAGAGGAACCGTTCA-TTCAGA-TATTTGGTATTTGCGCCTGTCCGATCGGGCAAT 53632 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120 | |||||||||| |||||||||||||||||||||||||||||||| ||||| || ||| | Sbjct 53633 GGCGCGAAGCTATCATCTGCTGGATTATGGCTGAACGCCTCTAAGCCAGAACCCGTGCTA 53692 Query 121 GAA 123 ||| Sbjct 53693 GAA 53695 >seq1 Length=5311644 Score = 100 bits (110), Expect = 5e-19 Identities = 97/123 (79%), Gaps = 4/123 (3%) Strand=Plus/Minus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 ||| ||||||||||| | |||||| | |||| |||||| ||||| | |||| | Sbjct 4330143 GTATGAGAGGAACCGTTCA-TTCAGATT---TGGTATTTGCGCCTGTCCAATTGGGCAAT 4330088 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120 | |||||||||| ||| |||||||||||||||||| ||||||||| | | | |||||| | Sbjct 4330087 GGCGCGAAGCTATCATTTGCTGGATTATGGCTGAATGCCTCTAAGCCGGGACCCATGCTA 4330028 Query 121 GAA 123 ||| Sbjct 4330027 GAA 4330025 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 819199753984