Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lentinula_20edodes_20[genbank_20GCA_5F002003045.1_202017-02-02] 1,951 sequences; 39,922,873 total letters Query= AAMG01000278.1 Length=318 Score E Sequences producing significant alignments: (Bits) Value seq1127 340 3e-91 >seq1127 Length=23621 Score = 340 bits (376), Expect = 3e-91 Identities = 259/302 (86%), Gaps = 3/302 (1%) Strand=Plus/Plus Query 19 CTTTCCTTCTGGGGATCCG-CATGCCCTTCACTGG-GTGTGCCGGGGAGCCAGGACTTTT 76 ||| ||| ||| || ||| | ||||||| | ||| ||| | |||||| ||||||||||| Sbjct 12307 CTTACCTCTTGGTGAGCCGGCGTGCCCTTTATTGGTGTGCGTCGGGGAACCAGGACTTTT 12366 Query 77 ACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTCGAATACATTAGCATGGAATA 136 || |||| |||||||||||||||||||||||||| ||| |||||||||||||||||||| Sbjct 12367 ACCTTGAGAAAATTAGAGTGTTCAAAGCAGGCCTATGCCTGAATACATTAGCATGGAATA 12426 Query 137 ATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGATTAATAG 196 ||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 12427 ATAAAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGAGTCGCCGTAATGATTAATAG 12486 Query 197 GGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTATTGAAGA 256 ||||||| ||||| | ||||| | | | |||||||||||||||||||| | | |||| Sbjct 12487 GGATAGTTGGGGGCATTGGTATTGAGTCGCTAGAGGTGAAATTCTTGGATTGACTCAAGA 12546 Query 257 CTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAACGAAAGTTAGG 316 | |||||||||||||| || |||||||||||||||||||||| ||||||| |||||| Sbjct 12547 CCGACTACTGCGAAAGCATTTGCCAAGGATGTTTTCATTAATCA-AGAACGAAGGTTAGG 12605 Query 317 GG 318 || Sbjct 12606 GG 12607 Score = 300 bits (332), Expect = 3e-79 Identities = 254/303 (84%), Gaps = 7/303 (2%) Strand=Plus/Minus Query 19 CTTTCCTTCTGGGGATCCG-CATGCCCTTCACTGG-GTGTGCCGGGGAGCCAGGACTTTT 76 ||| ||| ||| || ||| | ||||||| | ||| ||| | |||||| ||||||||||| Sbjct 1695 CTTACCTCTTGGTGAGCCGGCGTGCCCTTTATTGGTGTGCGTCGGGGAACCAGGACTTTT 1636 Query 77 ACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTT-TGCTCGAATACATTAGCATGGAAT 135 || |||| ||||||||||||||||||||||||| | ||| ||||||||||||||||||| Sbjct 1635 ACCTTGAGAAAATTAGAGTGTTCAAAGCAGGCCCTATGCCTGAATACATTAGCATGGAAT 1576 Query 136 AATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGATTAATA 195 |||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 1575 AATAAAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGAGTCGCCGTAATGATTAATA 1516 Query 196 GGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTATTGAAG 255 |||||||| ||||| | ||||| | | | |||||||||||||||||||| | | ||| Sbjct 1515 GGGATAGTTGGGGGCATTGGTATTGAGTCGCTAGAGGTGAAATTCTTGGATTGACTCAAG 1456 Query 256 ACTAACTACTGCGAAAGCGTTCACCAAGGATGTTT-TC-ATTAATCAGTGAAC-GAAAGT 312 || |||||||||||||| || || ||||||||| || |||||||| ||| ||| || Sbjct 1455 ACCGACTACTGCGAAAGCATTTGCC-AGGATGTTTCTCAATTAATCAAGAAACAGAAGGT 1397 Query 313 TAG 315 ||| Sbjct 1396 TAG 1394 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 915182144448