Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Limonomyces_20culmigenus_20[genbank_20GCA_5F002233555.1_202017-07- 25] 8,889 sequences; 36,136,062 total letters Query= NC_027867.1 Length=651523 Score E Sequences producing significant alignments: (Bits) Value seq240 111 7e-19 seq622 100 1e-15 >seq240 Length=16179 Score = 111 bits (122), Expect = 7e-19 Identities = 123/164 (75%), Gaps = 0/164 (0%) Strand=Plus/Plus Query 349052 GGCTTCTTCATCTTGGGCGTGGCGTCGAGAATCTCCTTGAGTCTGGGCATGCCCAGGGTC 349111 ||| |||| || || | || | ||| || |||||||| || | ||||| || || || Sbjct 11138 GGCGTCTTGATGTTCGTCGCGACGTTGATGATCTCCTTCAGCCGGGGCACACCGAGCGTG 11197 Query 349112 ACGTTCTTGGCCGCGACGCCGGCAAAGTGGAAGGTCTGGAGGGTCAACTGCGTGAGGGGC 349171 |||||||||| || ||| ||||| |||||||||| | || |||| |||||| |||| Sbjct 11198 ACGTTCTTGGACGAGACACCGGCGTAGTGGAAGGTGTTCAGCGTCATCTGCGTCGCGGGC 11257 Query 349172 TCGCCGATGCACTGGCCCGCGAGGATGCCTACCATCTCGCCGGG 349215 |||||||| |||| ||||||| |||| ||||||||| || Sbjct 11258 TCGCCGATCGACTGCGCCGCGAGCGTGCCGCACATCTCGCCCGG 11301 >seq622 Length=23078 Score = 100 bits (110), Expect = 1e-15 Identities = 425/658 (65%), Gaps = 39/658 (6%) Strand=Plus/Minus Query 448579 GCAGATGTGCATGAGGGTGGCGTCGCTGGCCTTGAAGAAGCGCTCCTCAAAGGCGTACTG 448638 ||||| ||||| || |||||||||||||| ||| | |||||| | ||| | Sbjct 3489 GCAGACGTGCAGCCGGTAGGCGTCGCTGGCCTCGAACAGGCGCTCTTTCAAGAAGCCGGC 3430 Query 448639 GGCGCCGTAGGACTTGAAGGAGACGCGCTCCATGTCGCCCAATCGGAGCCCGCCGTGTCG 448698 | |||||| || | | | || |||||||||| || || || ||||| ||||||| || Sbjct 3429 GACGCCGTGCGAGATCATGCAGTCGCGCTCCATCTCTCCGAAGCGGAGGCCGCCGTCGCG 3370 Query 448699 CAACTTGCCCTCGGTGGGCTGCCGCGTGAGGAGCGAGTACGGTCCCCTCTGC-CGCGTGT 448757 | | ||||||| |||||| || ||||||| | | |||| |||| || || | || Sbjct 3369 CGAGCGGCCCTCGACGGGCTGGCGGGTGAGGATC-TGGACGGGCCCCCGCGCACGTGAGT 3311 Query 448758 GCATCTTCTCCGAGGCCAGTTGCTTGAGGCTCTGGAAG-AAGAAGGGC--GCGTAGAACA 448814 | ||||| || | ||| |||||||||| |||| || | | |||| ||||| | Sbjct 3310 GGATCTTGTCGTCGACCATGTGCTTGAGGCGCTGGTAGTACGTCGGGCCGAGGTAGATC- 3252 Query 448815 TGCGGCACGGCATCATCTCGCCCGTCTGGCCGTCCGTAAAGATCGTCTTGCCCTCG-GGC 448873 |||| | ||| | | ||| || ||||||| ||| | | || |||| || | | Sbjct 3251 TGCG--CCTGCAGCTTGCGGCCGGTGTGGCCGT-GGTACATGACCTCGAGCCCGCGCGAC 3195 Query 448874 TCGATCATGCCCCTCTCCTCCATGTAGTCCATGAGCTCGGCCACGGAGAGGTCCGAAAAG 448933 | | | || || || || || | || | |||| | ||| | | Sbjct 3194 TGG---AAGC---------CCTTGGAGCGCAGCACCTGCGACACGCTTTCGACCGTCAGG 3147 Query 448934 GCCGTGCCGTCCTGCGGCAAGCCGCTCTCACAGCC------CGTGATGGCC-TGGAGGGC 448986 |||| | | ||| | | ||| ||| ||| ||| | || ||||| || Sbjct 3146 TCCGT---GAACGGCGTCGCGTCGCCCTCCTGGCCGAGCAGCGTCGCGACCTTGGAGAGC 3090 Query 448987 -----CTCGAGCAACATGG-CGTAGGTCATGCGCGACGGGTAGGCATGCGGGTTCATGAT 449040 ||||| ||| |||| || ||||||||||||||| || |||||||| ||||| Sbjct 3089 AGACACTCGACCAA-ATGGCCGATCGTCATGCGCGACGGGATCGCGTGCGGGTTGATGAT 3031 Query 449041 GATGTCGGGCGTCTCGCCGGCCGCGTTGAAGGGCATGTCCTCGGGGTTGACCACCAGGCC 449100 |||||||||| |||| | || || | ||||||||||| || | | | ||| Sbjct 3030 GATGTCGGGCACGATGCCGTCGGCCGTGTACGGCATGTCCTCCTGGCGGTACGTGATGCC 2971 Query 449101 GTTGACGCCCTTCTGGCCGTGGCGGCTGCAGAACTTGTCCCCCTGCTCGGGCTTGCGTGT 449160 | | ||||||||||||||| ||| ||||||||| || || || |||| || Sbjct 2970 GACGGTGCCCTTCTGGCCGTGCCGGGACGCGAACTTGTCGCCAATCTGCGGGATGCGCGT 2911 Query 449161 GAAGCGCAGCACGATCTTGATGGAGCGGAAGCCGTCCCTGTTGGTGGTGTCGATGACC 449218 | |||| | |||||||| | | ||||||| ||| |||||| || |||| Sbjct 2910 GGAGCGGATGCGGATCTTGACGAACTTCTGGCCGTCCGAGTTCGTGGTGATGAGGACC 2853 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2084495977386422