Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lyophyllum_20shimeji_20[genbank_20GCA_5F001950515.1_202016-12-09] 306 sequences; 52,434,773 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq1 188 6e-43 seq3 120 2e-22 >seq1 Length=2076502 Score = 188 bits (208), Expect = 6e-43 Identities = 379/556 (68%), Gaps = 7/556 (1%) Strand=Plus/Minus Query 61087 ATTTGGCGCATGTACAAAAAGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGTCGATTTG 61146 || |||| ||||| || ||||| |||||||| |||||||| | |||||| | || | Sbjct 1597178 ATCTGGCAGATGTATAAGAAGGCTGAAGCTTCGTTCTGGACAGCGGAGGAAATGGACCTC 1597119 Query 61147 TCCAAAGACATGAATGACTGGGAG---CGT-TTATCGAGCGGTGAACAACATTTCATTAA 61202 || || || | | |||||| | || ||| ||| | || | || ||||| Sbjct 1597118 TCGAAGGATCTTCACGACTGGAACAACCGCCTTAACGA-CAACGAGCGCCACTTCATCTC 1597060 Query 61203 ACATGTGTTGGCGTTCTTTGCCGCTTCGGACGGTATCGTCAATGAGAATTTATTGGAACG 61262 || || | || |||||||| || || || || || |||||||||||||| | ||||| Sbjct 1597059 TCACGTCCTCGCCTTCTTTGCTGCCTCCGATGGGATAGTCAATGAGAATTTGCTCGAACG 1597000 Query 61263 TTTCGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCAT 61322 || | | || || || || | ||||| || |||||||| || ||||||||| || Sbjct 1596999 CTTTTCCAACGAAGTTCAGGTCGCCGAGGCTCGGTGTTTCTATGGGTTCCAGATTATGAT 1596940 Query 61323 GGAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGGAGCGGGC 61382 ||| || ||||||| |||| ||| | |||||||| || ||||||| ||| || Sbjct 1596939 GGAAAACATCCACTCCGAGACGTATTCCCTCCTCATCGACACTTACATCAAGGATGCTGC 1596880 Query 61383 GGAACGTGAACGATTGTTCAATGCCATCGAGACGATACCGGCGGTGAAGCGGAAAGCGGA 61442 || || || ||||| ||||| | ||||| || || | ||| ||| ||||| Sbjct 1596879 CGAGCGGGAGTATCTGTTCGATGCCGTTGAGACCATCCCTTGCATCAAGAAGAAGGCGGA 1596820 Query 61443 TTGGGCCTTCAATTGGATCACCAGTACAAC-GGCTACATTTGGTGAACGATTGCTGGCAT 61501 ||||| ||| ||||| | | | || | || || | ||||| | | || | Sbjct 1596819 ATGGGCTCTCAGGTGGAT-TGCTGACCGACACTCGACTTTCGCCGAACGTCTCGTTGCCT 1596761 Query 61502 TTGCGGTGGTCGAGGGTGTATTTTTCAGTGGATCGTTTGCCGCAATCTTTTGGTTGAAGA 61561 |||| | || || ||| | || ||| ||||| |||||| | ||||| ||| |||||| Sbjct 1596760 TTGCCGCTGTTGAAGGTATCTTCTTCTCAGGATCATTTGCCTCCATCTTCTGGATGAAGA 1596701 Query 61562 AACGTGGACTTATGCCCGGTCTGACCTTCAGCAATGAGTTGATATCACGCGACGAGGGCA 61621 |||| || || ||||| || | |||||| ||||||| | || || || ||||||| Sbjct 1596700 AACGCGGTCTCATGCCTGGCTTAACCTTCTCCAATGAGCTCATTAGCCGTGATGAGGGCA 1596641 Query 61622 TGCATTGTGATTTTGC 61637 ||||| |||||||| Sbjct 1596640 TGCATACCGATTTTGC 1596625 Score = 127 bits (140), Expect = 2e-24 Identities = 279/411 (68%), Gaps = 14/411 (3%) Strand=Plus/Plus Query 61186 GAACAACATTTCATTAAACATGTGTTGGCGTTCTTTGCCGCTTCGGACGGTATCGTCAAT 61245 |||| | ||||||| ||||| |||| || || || || || || || ||||| || Sbjct 1598392 GAACGATATTTCATCTCTCATGTTCTGGCCTTTTTCGCTGCCTCTGATGGCATCGTTAAC 1598451 Query 61246 GAGAATTTATTGGAACGTTTCGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTAC 61305 || || | | ||||| || | | ||||| || ||| | ||||||||||| ||||| Sbjct 1598452 GAAAACCTCGTTGAACGGTTTTCCAACGAGGTTCAGGTGGCTGAGGCGCGTTGCTTCTAT 1598511 Query 61306 GGCTTCCAGATTGCCATG---GAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCGAT 61362 || || || | ||||| || || || |||||||||| ||| | ||||| ||| Sbjct 1598512 GGTTTTCAAA---CCATGATAGAAAACGTACACTCGGAGACCTACTCGTTGCTCATTGAT 1598568 Query 61363 ACGTACATCAGGGAGCGGGCGGAACGTGAACGAT--TGTTCAATGCCATCGAGACGATAC 61420 || || ||||| || | || || | |||| | |||| | || || || || || | Sbjct 1598569 ACCTATATCAGAGATCCGGACGA--GCGAACTCTCCTGTTTGACGCTATTGAAACAATTC 1598626 Query 61421 CGGCGGTGAAGCGGAAAGCGGATTGGGCCTTCAATTGGATCACCAGTACAA--CGGCTAC 61478 | | | ||||| || || |||||||| ||| ||||| | ||| |||| | | || Sbjct 1598627 CTTCCATCAAGCGCAAGGCCGATTGGGCGCTCAGGTGGAT-AGCAG-ACAAGCAGTCGAC 1598684 Query 61479 ATTTGGTGAACGATTGCTGGCATTTGCGGTGGTCGAGGGTGTATTTTTCAGTGGATCGTT 61538 |||| ||| || | | || || || | || || ||| |||||||| |||||||| Sbjct 1598685 GTTTGCGGAAAGACTTGTCGCCTTCGCTGCTGTGGAAGGTATATTTTTCTCAGGATCGTT 1598744 Query 61539 TGCCGCAATCTTTTGGTTGAAGAAACGTGGACTTATGCCCGGTCTGACCTT 61589 || |||| || ||| ||||||| || || | ||||| || || || || Sbjct 1598745 CGCTTCAATATTCTGGATGAAGAAGCGCGGTTTCATGCCTGGCCTCACATT 1598795 Score = 102 bits (112), Expect = 6e-17 Identities = 123/165 (75%), Gaps = 2/165 (1%) Strand=Plus/Minus Query 61756 CTCATCGGCATGAATTGTGGACTAATGTCGCAGTATATTGAATTTGTTGCCGACCGTCTG 61815 ||||| ||||||||| || | |||| ||||||||||| || |||||||||||||| Sbjct 1596452 CTCATTGGCATGAATGCTGACTTGATGTGCCAGTATATTGAGTTCGTTGCCGACCGTCTC 1596393 Query 61816 TTGGTCG-ATTTGGGTATGAAGCGGATCTATAATACGAAAAACCCATTTGATTTCATGGA 61874 | |||| | | ||| |||| || |||| || | | ||| || || || |||||||| Sbjct 1596392 CTAGTCGCACTGGGGAATGAGAAGG-TCTACAACAAAACAAATCCGTTCGACTTCATGGA 1596334 Query 61875 CATGATTTCGCTGGATGGCAAGACGAATTTTTTCGAGAAACGTGT 61919 |||||| || || | || ||||| || || |||||||| || || Sbjct 1596333 CATGATCTCTCTCCAGGGGAAGACTAACTTCTTCGAGAAGCGGGT 1596289 >seq3 Length=1723946 Score = 120 bits (132), Expect = 2e-22 Identities = 165/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 66344 AATAGATCAGGTATCCAGAGGGCGTAGAAGAGATCGCGTGCTCGTTGCTCCTCAATGCCG 66403 || ||||| || ||||| ||||| ||||| ||||| | ||||| ||| || | || Sbjct 704109 AAGAGATCCGGAATCCAAAGGGCATAGAAAAGATCCCTCGCTCGCACCTCTTCCTTTCCA 704050 Query 66404 TGATTTTTGCGCAAGTCGAGGAACTCAAAGATGTCGGCATGCCATGGTTCCAGGTAGATG 66463 || ||||| | || || | |||||| || | || |||||||||||||| | |||||| Sbjct 704049 TGGTTTTTCCTCAGATCCAAGAACTCGAAAACATCAGCATGCCATGGTTCAATATAGATG 703990 Query 66464 GCGAACGAGCCCATACGTTTGCCGCCACCTTGGTCGACGTAGCGAGCGACATTGTTGAAG 66523 ||||| | ||| |||||| ||||||||||||||| |||||||| || | | Sbjct 703989 GCGAAGGCGCCAGGGCGTTTGTTGCCACCTTGGTCGACATAGCGAGCAGTGGCGTCGTAC 703930 Query 66524 ACACGCAACATCGGTACGAGCCCGTTAGATTTGCCATTGGTGCCGTCGATG 66574 | || | ||| || |||| || || || | || ||||| ||| ||||| Sbjct 703929 GCGCGAAGCATTGGCACGATGCCATTTGAGTAACCGTTGGTTCCGGCGATG 703879 Score = 96.9 bits (106), Expect = 3e-15 Identities = 225/337 (67%), Gaps = 2/337 (1%) Strand=Plus/Minus Query 66587 GCCCGTATATCGTGAACATTCAGACCAATACCACCGGCCGTCTTCGAGATGGCAGCACAA 66646 || || ||| ||||| || || ||||| || || ||||| || ||| ||||||| Sbjct 703813 GCACGGATACAGTGAATGTTAAGGCCAATGCCTCCTGCCGTTTTGCTGATCATAGCACAA 703754 Query 66647 TCGGCCACTGTCCGGAATATGCCGTCAATGGAGTCACCCTTGATGGTCAGGAGGTAGCAT 66706 || || | ||||| || || ||||| |||| ||| | ||| |||| Sbjct 703753 CTTTTCAGGGTGTCATAAATGCCTTCGATAGAGTCCTCCTTCATGCAGACCAGGAAGCAC 703694 Query 66707 GAACTAAGTTGGGGTTTGGGTGTGGCGGCCGAGAAGAGGGTGGGTGTAGCGTGCGTAAAG 66766 || |||||||| || | |||||| | || ||||||||| || | |||||||| || Sbjct 703693 GAGCTAAGTTGTGGGTGGGGTGTACCTGCGTTGAAGAGGGTAGGCGACGCGTGCGTGAAA 703634 Query 66767 TAATGGCGAGACATGTAATTGTACGTCTCGATGACAGCATCAATGTTTTCGCCATGAATC 66826 ||| | |||||| |||||| || || || || ||| |||| |||||||| Sbjct 703633 TAACGTTCGGACATGAGATTGTAAGTTTCAATAACGCGATCCATGTCGGAACCATGAATG 703574 Query 66827 CCGAGTGC-ACATCGCATCAGGAGGTATTGAGGCCGTTCGACCAGCCGATCCTTGATATG 66885 || | || ||| ||||| | | | ||| || ||||| | | || | |||||| | Sbjct 703573 CCAACGGCGACA-CGCATGATCATATGTTGGGGACGTTCAGCGACGCGCCCATTGATACG 703515 Query 66886 CATTAAGTAGGAGCGTTCCAGGGTCTTGATACCAAAG 66922 | | ||||||||||||| ||| |||| ||| ||| Sbjct 703514 GAGGAGATAGGAGCGTTCCAAGGTTTTGAAACCGAAG 703478 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397566517319840