Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lyophyllum_20shimeji_20[genbank_20GCA_5F001950515.1_202016-12-09] 306 sequences; 52,434,773 total letters Query= NC_032108.1 Length=589068 Score E Sequences producing significant alignments: (Bits) Value seq5 104 9e-17 seq41 98.7 4e-15 >seq5 Length=1591901 Score = 104 bits (114), Expect = 9e-17 Identities = 210/312 (67%), Gaps = 0/312 (0%) Strand=Plus/Plus Query 12734 ACATCGTAAAAGAAAACTTTCATGCCTAGACACTCTGCTAGGACAGAGACCTGAGAACCA 12793 || ||||| |||| ||| || || | ||||||| ||||| |||| |||||||||| Sbjct 1508318 ACGTCGTAGAAGAGAACGCGGATACCAAAGGACTCTGCGAGGACGGAGAGCTGAGAACCA 1508377 Query 12794 ATGTTACCATAACCTACTATACCTAGGGTCTTTCCTCTAACTTCACGGCAACCTTGAGAA 12853 |||| || || || || ||||| || |||||||| | |||||| | |||||| | || Sbjct 1508378 ATGTGGCCGTAGCCGACGATACCGAGTGTCTTTCCACGAACTTCCCAGCAACCCTTTGAC 1508437 Query 12854 GTCTTGTTCCAAATGCCTTGGTGTAGTTCTTTGTTTCTATCTCCAACCTGACGAGAAAGA 12913 ||||||||| ||||| | | | ||||| | | || | | ||| ||||| || Sbjct 1508438 TGCTTGTTCCAGATGCCGTTGCGAAGTTCATATGAACGCTCACACAGCTGGCGAGAGAGG 1508497 Query 12914 TTAATTAGTTGTCCTATGATGAGCTCTGCCACGCTTCTAGTGTTGCAAAAGGGAGAATTA 12973 ||| || | | | |||| |||||||| ||| | | |||| | || || || || Sbjct 1508498 GCAATGAGCTCTGCCATGACCAGCTCTGCGACGGAGCGCGAGTTGGAGAACGGGGAGTTG 1508557 Query 12974 AAGACTGCAATGCCTAGTTTGGTAGCCATGTCTAGATTAACCTGATCGTAACCAATGCAG 13033 || || | ||||| || || | || | |||||| | ||| |||||| Sbjct 1508558 AAAACAGGGATGCCGGCGGCGGCGGCGGCTTTGAGGTCAACCTGGTTAGTACCGATGCAG 1508617 Query 13034 AAGCATCCTATG 13045 |||||||| ||| Sbjct 1508618 AAGCATCCAATG 1508629 >seq41 Length=397776 Score = 98.7 bits (108), Expect = 4e-15 Identities = 117/155 (75%), Gaps = 4/155 (3%) Strand=Plus/Plus Query 364423 ACCAATAGTCATACGAGAGGGAATGGAGAGAGGGTTGATGATGATGTCAGGCACCATGCC 364482 ||| || ||||||||||| ||||||| | | || || ||||||||||| || || ||||| Sbjct 48184 ACCGATGGTCATACGAGAAGGAATGGCGTGTGGATTAATGATGATGTCGGGTACGATGCC 48243 Query 364483 GTCAGCGGTAAAGGGCATATCTTC-GGGAGGAACGATGAGACCAATGGTTCCCTTTTGCG 364541 || | ||| || |||||||| || || | ||| ||| ||||| || || ||||| Sbjct 48244 CTCCGAGGTGAAAGGCATATCCTCTTGGCGATACG-TGATTCCAATAGTACCTTTTTGAC 48302 Query 364542 CATAGCGAGAAGCAAACTTGTCGCCAATGACTGGG 364576 ||| || || ||||||||||| || || ||||| Sbjct 48303 CATGACGGGAGGCAAACTTGTCTCCGAT--CTGGG 48335 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1884879010067258