Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Macrocystidia_20cucumis_20[genbank_20GCA_5F001179725.1_202015-07-08] 204,508 sequences; 46,746,859 total letters Query= AAMG01000190.1 Length=117 Score E Sequences producing significant alignments: (Bits) Value seq133890 89.7 3e-16 seq195127 86.0 3e-15 seq193646 86.0 3e-15 seq188876 77.0 2e-12 seq121580 71.6 8e-11 seq63243 71.6 8e-11 seq53285 71.6 8e-11 >seq133890 Length=61 Score = 89.7 bits (98), Expect = 3e-16 Identities = 55/59 (93%), Gaps = 0/59 (0%) Strand=Plus/Minus Query 59 CCGATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 ||||||||||||||||||||||||| |||| |||||| ||||||||||||||| ||||| Sbjct 61 CCGATCCCTAGTCGGCATAGTTTACTGTTACGACTACAACGGTATCTGATCGTTTTCGA 3 >seq195127 Length=61 Score = 86.0 bits (94), Expect = 3e-15 Identities = 53/57 (93%), Gaps = 0/57 (0%) Strand=Plus/Minus Query 61 GATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 ||||||||||||||||||||||| |||||| |||| ||||||||||||||| ||||| Sbjct 61 GATCCCTAGTCGGCATAGTTTACTGTTAAGCCTACAACGGTATCTGATCGTTTTCGA 5 >seq193646 Length=61 Score = 86.0 bits (94), Expect = 3e-15 Identities = 53/57 (93%), Gaps = 0/57 (0%) Strand=Plus/Plus Query 61 GATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 ||||||||||||||||||||||| |||||| |||| ||||||||||||||| ||||| Sbjct 1 GATCCCTAGTCGGCATAGTTTACTGTTAAGTCTACAACGGTATCTGATCGTTTTCGA 57 >seq188876 Length=52 Score = 77.0 bits (84), Expect = 2e-12 Identities = 48/52 (92%), Gaps = 0/52 (0%) Strand=Plus/Minus Query 64 CCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTC 115 |||||||||||||||||||| |||||||||| ||||||||||||||| ||| Sbjct 52 CCCTAGTCGGCATAGTTTACTTTTAAGACTACAACGGTATCTGATCGTTTTC 1 >seq121580 Length=61 Score = 71.6 bits (78), Expect = 8e-11 Identities = 44/47 (94%), Gaps = 0/47 (0%) Strand=Plus/Minus Query 57 GCCCGATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTAT 103 |||||||||||||||| |||||||||| ||||||||||| ||||||| Sbjct 47 GCCCGATCCCTAGTCGTCATAGTTTACTGTTAAGACTACAACGGTAT 1 >seq63243 Length=61 Score = 71.6 bits (78), Expect = 8e-11 Identities = 45/49 (92%), Gaps = 0/49 (0%) Strand=Plus/Minus Query 69 GTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 ||||||||||||||| ||||||||||| || |||||||||||| ||||| Sbjct 61 GTCGGCATAGTTTACTGTTAAGACTACAACTGTATCTGATCGTTTTCGA 13 >seq53285 Length=61 Score = 71.6 bits (78), Expect = 8e-11 Identities = 44/47 (94%), Gaps = 0/47 (0%) Strand=Plus/Minus Query 57 GCCCGATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTAT 103 |||||||||||||||| |||||||||| ||||||||||| ||||||| Sbjct 47 GCCCGATCCCTAGTCGACATAGTTTACTGTTAAGACTACAACGGTAT 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 277866234120