Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Macrocystidia_20cucumis_20[genbank_20GCA_5F001179725.1_202015-07-08] 204,508 sequences; 46,746,859 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq201019 203 3e-47 seq204124 199 3e-46 seq203715 116 3e-21 >seq201019 Length=96896 Score = 203 bits (224), Expect = 3e-47 Identities = 383/558 (69%), Gaps = 9/558 (2%) Strand=Plus/Plus Query 61087 ATTTGGCGCATGTACAAAAAGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGTCGATTTG 61146 || |||| |||||||| || ||||| ||||| |||||||| | |||||| | || | Sbjct 28935 ATATGGCAAATGTACAAGAAAGCGGAGGCTTCGTTCTGGACCGCCGAGGAGATGGACCTT 28994 Query 61147 TCCAAAGACATGAATGACTGGGAG---CGTTTAT-CGAGCGGTGAACAACATTTCATTAA 61202 || || ||| | | |||||| | |||||| ||| | || | |||||||| Sbjct 28995 TCAAAGGACCTTCACGACTGGAACAATCGTTTAAACGA-CAACGAGCGGCATTTCATCTC 29053 Query 61203 ACATGTGTTGGCGTTCTTTGCCGCTTCGGACGGTATCGTCAATGAGAATTTATTGGAACG 61262 || || | || |||||||| || || ||||| || ||||| ||||| || | ||||| Sbjct 29054 CCACGTTCTCGCCTTCTTTGCGGCGTCCGACGGCATAGTCAACGAGAACTTGGTAGAACG 29113 Query 61263 TTTCGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCAT 61322 |||| | | || || |||| | ||||| || || ||||| ||||||||||| || Sbjct 29114 TTTCTCTAATGAAGTTCAAGCTGCCGAGGCCCGGTGCTTCTATGGCTTCCAGATCATGAT 29173 Query 61323 GGAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGGAGCGGGC 61382 ||| ||| |||| || |||| ||| | |||||||| || ||||||| || | | Sbjct 29174 GGAAAATATCCATTCCGAGACATACTCCCTCCTCATCGACACCTACATCAAAGACCCAGT 29233 Query 61383 GGAACGTGAACGATTGTTCAATGCCATCGAGACGATACCGGCGGTGAAGCGGAAAGCGGA 61442 ||| || ||| | || ||||| | || || || || | || ||||| || || Sbjct 29234 GGAGCGCGAATATCTTTTTGATGCCGTTGAAACCATTCCCTGTATCAAACGGAAGGCAGA 29293 Query 61443 TTGGGCCTTCAATTGGATCACCAGTACAACGGCT--ACATTTGGTGAACGATTGCTGGCA 61500 |||||||| || ||||| || |||| ||| || |||| || || || | || Sbjct 29294 CTGGGCCTTGAAGTGGATATCC--GACAAAAGCTCCACTTTTGCAGAGCGTCTGGTCGCG 29351 Query 61501 TTTGCGGTGGTCGAGGGTGTATTTTTCAGTGGATCGTTTGCCGCAATCTTTTGGTTGAAG 61560 ||||| | || || || | || ||| || |||||||| | ||||||||| |||| Sbjct 29352 TTTGCCGCTGTTGAAGGGATTTTCTTCTCGGGCTCGTTTGCGTCCATCTTTTGGATGAAA 29411 Query 61561 AAACGTGGACTTATGCCCGGTCTGACCTTCAGCAATGAGTTGATATCACGCGACGAGGGC 61620 || || || || |||||||| || || ||| ||||||| | || ||||| ||||| Sbjct 29412 AAGCGAGGCCTGATGCCCGGCCTTACTTTCTCCAATGAGCTCATCAGCCGCGATGAGGGG 29471 Query 61621 ATGCATTGTGATTTTGCT 61638 ||||| || |||||| Sbjct 29472 ATGCACACCGACTTTGCT 29489 Score = 100 bits (110), Expect = 2e-16 Identities = 137/185 (74%), Gaps = 6/185 (3%) Strand=Plus/Plus Query 61738 GACGCTTTGCCCGTCTCACTCATCGGCATGAATTGTGGACTA-ATGTCGCAGTATATTGA 61796 || ||||| || || || || ||||||||| | | || |||| || || ||||| Sbjct 29640 GATGCTTTACCAGTGAAGCTGATTGGCATGAAT-GCGACCTTGATGTGCCAATACATTGA 29698 Query 61797 ATTTGTTGCCGACCGTCTGTTGGT--CGATTTGGGTATGAAGCGGATCTATAATACGAAA 61854 |||||| || |||||||| ||||| || || || |||| || ||||||| | | Sbjct 29699 ATTTGTCGCAGACCGTCTTTTGGTGTCGCTT-GGAAATGACAAGG-TCTATAACTCAACG 29756 Query 61855 AACCCATTTGATTTCATGGACATGATTTCGCTGGATGGCAAGACGAATTTTTTCGAGAAA 61914 ||||| || || |||||||||||||| ||||| | ||||| ||||| |||||||| ||| Sbjct 29757 AACCCCTTCGACTTCATGGACATGATCTCGCTCCAAGGCAAAACGAACTTTTTCGAAAAA 29816 Query 61915 CGTGT 61919 || || Sbjct 29817 CGCGT 29821 >seq204124 Length=22413 Score = 199 bits (220), Expect = 3e-46 Identities = 390/571 (68%), Gaps = 9/571 (2%) Strand=Plus/Plus Query 61087 ATTTGGCGCATGTACAAAAAGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGTCGATTTG 61146 || |||| ||||| || || || |||||||| || ||||| | ||||| | || ||| Sbjct 6137 ATATGGCAGATGTATAAGAAAGCTGAAGCTTCGTTTTGGACTGCAGAGGAAATGGACTTG 6196 Query 61147 TCCAAAGACATGAATGACTGGG--AGCGT--TTATCGAGCGGTGAACAACATTTCATTAA 61202 || || ||| | | |||||| | | | | ||| | |||| || || ||| Sbjct 6197 TCGAAGGACCTTCACGACTGGACAAACAAACTCAACGA-CAACGAACGCCACTTTATTTC 6255 Query 61203 ACATGTGTTGGCGTTCTTTGCCGCTTCGGACGGTATCGTCAATGAGAATTTATTGGAACG 61262 || || || || || || |||||||| ||||| || ||||| |||||| | | || || Sbjct 6256 TCACGTTTTAGCCTTTTTCGCCGCTTCTGACGGGATTGTCAACGAGAATCTGGTCGAGCG 6315 Query 61263 TTTCGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCAT 61322 ||| | | || || |||| | ||||| || |||||||| |||||||| || || Sbjct 6316 CTTCTCAAACGAAGTTCAAGCTGCCGAGGCACGGTGTTTCTATGGCTTCCAAATCATGAT 6375 Query 61323 GGAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGGAGCGGGC 61382 ||| || |||| ||||||| ||| | ||||||||||||||||||| ||| | || Sbjct 6376 GGAAAACATCCATTCGGAGACATACTCGCTCCTCATCGATACGTACATCAAGGACCCAGC 6435 Query 61383 GGAACGTGAACGATTGTTCAATGCCATCGAGACGATACCGGCGGTGAAGCGGAAAGCGGA 61442 ||||| || | || | || ||||||| || || | || || || || || Sbjct 6436 CGAACGCGAGTACCTCTTTGACGCTGTCGAGACCATCCCATGCATCAAACGCAAGGCCGA 6495 Query 61443 TTGGGCCTTCAATTGGATCACCAGTACAACGGCT--ACATTTGGTGAACGATTGCTGGCA 61500 ||||| |||||||||| || |||| | || ||||| || ||||| | | || Sbjct 6496 CTGGGCACTCAATTGGATATCC--GACAAAGACTCGACATTCGGAGAACGTCTCGTCGCT 6553 Query 61501 TTTGCGGTGGTCGAGGGTGTATTTTTCAGTGGATCGTTTGCCGCAATCTTTTGGTTGAAG 61560 || || | || ||||| | || || ||||| ||||| | || || ||| ||||| Sbjct 6554 TTCGCCGCTGTTGAGGGCATCTTCTTTTCCGGATCTTTTGCGTCTATTTTCTGGATGAAG 6613 Query 61561 AAACGTGGACTTATGCCCGGTCTGACCTTCAGCAATGAGTTGATATCACGCGACGAGGGC 61620 || ||||| | ||||| ||||| ||||| ||| |||||||| || ||||| ||| Sbjct 6614 AAGCGTGGTTTGATGCCAGGTCTTACCTTTTCCAACGAGTTGATCAGCCGGGACGAAGGC 6673 Query 61621 ATGCATTGTGATTTTGCTGTTTTGCTATTCA 61651 ||||| ||||||||| | |||| |||| Sbjct 6674 ATGCACACGGATTTTGCTTGTCTGCTTTTCA 6704 Score = 84.2 bits (92), Expect = 2e-11 Identities = 107/147 (73%), Gaps = 8/147 (5%) Strand=Plus/Plus Query 61777 CTAATGTCGCAGTATATTGAATTTGTTGCCGACCGTCTGTTGGTCGATTTGGGTA----T 61832 || |||| || || ||||| ||||| || || || ||| ||||| ||||| | | Sbjct 6891 CTCATGTGCCAATACATTGAGTTTGTAGCTGATCGCCTGCTGGTCTCGTTGGGCAACGAT 6950 Query 61833 GAAGCGGATCTATAATACGAAAAACCCATTTGATTTCATGGACATGATTTCGCTGGATGG 61892 ||| | |||||| ||| || || |||||||| ||||| ||||| ||||| | || Sbjct 6951 AAAGTG----TATAATTCGACCAATCCGTTTGATTTTATGGATATGATATCGCTCCAAGG 7006 Query 61893 CAAGACGAATTTTTTCGAGAAACGTGT 61919 |||||| || ||||||||||| || || Sbjct 7007 CAAGACCAACTTTTTCGAGAAGCGCGT 7033 >seq203715 Length=28578 Score = 116 bits (128), Expect = 3e-21 Identities = 157/219 (72%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 66349 ATCAGGTATCCAGAGGGCGTAGAAGAGATCGCGTGCTCGTTGCTCCTCAATGCCGTGATT 66408 |||||| ||||| ||||| || || | || || || || ||||| |||| ||||| Sbjct 23025 ATCAGGAATCCAAAGGGCATAAAACAAGTCACGAGCACGAGATTCCTCCTTGCCATGATT 22966 Query 66409 TTTGCGCAAGTCGAGGAACTCAAAGATGTCGGCATGCCATGGTTCCAGGTAGATGGCGAA 66468 |||||||| || | ||| |||||||||||||| ||||| ||||| | |||||| || || Sbjct 22965 TTTGCGCAGATCCAAGAAGTCAAAGATGTCGGCGTGCCACGGTTCGATGTAGATAGCAAA 22906 Query 66469 CGAGCCCATACGTTTGCCGCCACCTTGGTCGACGTAGCGAGCGACATTGTTGAAGACACG 66528 | ||| ||||||| ||||||||| || ||||| | || || | | || Sbjct 22905 AGCACCCGGACGTTTGTTGCCACCTTGATCAACGTATCTTGCTGTGGCGTCATACGCTCG 22846 Query 66529 CAACATCGGTACGAGCCCGTTAGATTTGCCATTGGTGCC 66567 ||||| || |||| ||||| || | |||||||| || Sbjct 22845 TAACATTGGAACGATGCCGTTTGAGTAACCATTGGTTCC 22807 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396577085117120