Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Meira_20nashicola_20[genbank_20GCA_5F001600355.1_202016-03-01] 58 sequences; 18,015,688 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq2 239 4e-58 >seq2 Length=3834998 Score = 239 bits (264), Expect = 4e-58 Identities = 961/1500 (64%), Gaps = 30/1500 (2%) Strand=Plus/Plus Query 65429 ACTTGGAACTCGCCGGACAGTACACGACGGACATAGATGTTGGACGTGATGGGTTCAAAG 65488 |||||||| || || | | ||||| | |||||||| || |||| ||||||||| Sbjct 3099603 ACTTGGAATTCTCCTGCTAACACACGCCTTGTGTAGATGTTTGAGGTGAAAGGTTCAAAG 3099662 Query 65489 GATTCAGTGTTGCCTAGAATTTGGGCAGTAGATGCAGTTGGCATGGGAGCGACCAACAAT 65548 ||||| || |||| |||||| ||||| ||||| |||||||| || | ||| | Sbjct 3099663 CATTCATTGAATCCTAAAATTTGACTGGTAGAAGCAGTAGGCATGGGTGCCAACAATAGC 3099722 Query 65549 GAGTTTCGCAATCCGTTCATTTCAATGTTGTGACGCAATTCGTCCCAGTTCCACA--TCG 65606 || || || || |||| | | |||| || | | ||| ||||||||| | ||| Sbjct 3099723 GAATTACGTAAACCGTGCTCTGCAATCTTTTCTTTTAGTTCAGACCAGTTCCATAGATCG 3099782 Query 65607 GTTTATCGTCGACATCCACGGGCCACATATCCTGTTGCAGGGTTCCGATACTGGCCGGTG 65666 | | | | ||| |||||| || | ||| | ||| |||| || || | Sbjct 3099783 GATGGTGTT--------ACGTTCCACATGTCATATTGTAATTCTCCCTTACTTGCAGGGG 3099834 Query 65667 AACCGAGGAAACTATCGTACACTCCCTCCTCCTTGGCAAGTTGACAGCTGGTCTCGAGTG 65726 | || | | | || || ||| || || || | || || || |||| | | Sbjct 3099835 ATCCCTCGTATGTTTCATATGTTCCTAATTCTTTAGCCAATTCGCAACTTCTCTCCAAAG 3099894 Query 65727 CGGCAAAATAAATGGTCTCGAAAATGCGTCGATTAAGTTCACGTGCCTCATCGCTCTCGT 65786 | ||| || || || || || || | || | || ||||| || ||| Sbjct 3099895 CAGCATGGTAGATCGTTTCAAAGATTTGAACGTTCAATTTGCGTGCTTCGGGTGAATCGA 3099954 Query 65787 ACGGCATACCCATCAGGACAAAAGTGTCGGCCAGACCTTGAACTCCAATACCGATGGGAC 65846 | |||||||||| | | || | || || ||||| | ||||| |||||||| |||| Sbjct 3099955 AGGGCATACCCAAGATCATGAATGCATCTGCAAGACCGTTGACTCCGATACCGATAGGAC 3100014 Query 65847 GATGACGCAAATTGGAACGTCTCGCCTCAGGTACAGGGTAGTAATTGATATCGATAATGC 65906 | ||||||| || || | | || || || ||||| ||||||||||| ||||| Sbjct 3100015 GGTGACGCATGTTAGATCTGCGTGCTTCTTCGACTGGGTAATAATTGATATCAATAATTT 3100074 Query 65907 GATTCAAATTGCGTGTCACCACATGCACGA-TACGTCGCAATTGTTCGAAATCAAAA-TG 65964 ||||| || | | ||| | | | | ||| | || || ||||||| || | Sbjct 3100075 TGTTCAAGTTACCACAGATCACTTTGGCAACTGCGTGTAACTTCTT-GAAATCATAAGTC 3100133 Query 65965 TTTAGGACGATCGGGAGTGCCGGACACCACAAACTTGGGAAGGGCAAGAGATGCGAGGTT 66024 ||| | | | || || || | | |||| || | ||| || || | || Sbjct 3100134 TTT-----GTT--GCAG----GGTCAACGTAGG-TTGGCAAAG-CAATCGAAGCCAAATT 3100180 Query 66025 GCAGACAGCTATCTCGTCAGGAGCGGTATACTCGACAATTTCGGTGCACAGATTACTGCA 66084 ||| || || | || ||||| || || || | |||||| ||||||| ||| | Sbjct 3100181 GCACACGGCAACTTCATCAGGTGCACAGTATTCAATAATTTCTGTGCACAAGTTAGAGTT 3100240 Query 66085 GCGTATGGTGCCCAAATTCTGTTGATTACTCTTGC-GATTGCATGCATCCTTGTACATCA 66143 ||||| |||||||||| ||| ||||| || | | |||| |||||| ||||||| || Sbjct 3100241 CTTGATGGTACCCAAATTCTTTTGGTTACTTTTTCTGTTTGC-TGCATCTTTGTACAACA 3100299 Query 66144 TGTACGGAGTGCCGGTCTCAACTTGGGACTCAATGATGGCGTGCCAAAGAGCGCGTGCCT 66203 || | || | || || ||| ||| || |||| || || | ||| | |||| | Sbjct 3100300 TGAATGGGTTACCAGTTTCAGTTTGAGATTCAAGAATAGCATACCACAACTTTTGTGCTT 3100359 Query 66204 TCACCGTACGTACCGCCCTACCTTTGCGTTCGTAATGTTCGTAGAGGTGTTCGAAGGATT 66263 | | | | ||| || |||| ||||||| ||||| || | ||| || || Sbjct 3100360 TGATCTTCTTTACATATCTGCCTTGCTTTTCGTAAGACTCGTAAAGTTTTTCAAATTCTT 3100419 Query 66264 CACCCCATACTTCGGACAGACATGGACACTTGTGTGGACACATCAGCGACCAATCACCAT 66323 |||| | || | || || || | | || || ||||||| |||| ||||||| Sbjct 3100420 CACCGTAACAATCAGCCAAACCAGGGGATTCGTTGGGGCACATCAAGCACCATTCACCAT 3100479 Query 66324 CCTGTTCTACACGACGCATAAATAGATCAGGTATCCAGAGGGCGTAGAAGAGATCGCGTG 66383 ||||| ||||| ||| || | || || ||||| || || ||||| || || |||| Sbjct 3100480 TTTGTTCAACACGCTTCATGAACAAGTCTGGAATCCATAGAGCATAGAATAGTTCACGTG 3100539 Query 66384 CTCGTTGCTCCTCAATGCCGTGATTTTTGCGCAAGTCGAGGAACTCAAAGATGTCGGCAT 66443 | || || || | |||||||||||||| || || | ||| ||||| | || | || Sbjct 3100540 CACGAACTTCTTCTTTTCCGTGATTTTTGCGTAAATCCAAGAATTCAAACACATCTGAAT 3100599 Query 66444 GCCATGGTTCCAGGTAGATGGCGAACGAGCCCATACGTTTGCCGCCACCTTGGTCGACGT 66503 |||||||||| | ||| | ||| || | ||| | ||| || ||||| || || | Sbjct 3100600 GCCATGGTTCAACGTAAACGGCAAAAGCACCCGGTCTCTTGTTACCTCCTTGATCAACAT 3100659 Query 66504 AGCGAGCGACATTGTTGAAGACACGCAACATCGGTACGAGCCCGTTAGATTTGCCATTGG 66563 | ||||| |||| || ||||||||||| ||||||| |||||| | | || || | Sbjct 3100660 AACGAGCAGTTGTGTTAAATACACGCAACATAGGTACGATACCGTTACTTGTTCCGTTTG 3100719 Query 66564 TGCCGTCGATGGGGGATCCTCGTGCCCGTATATCGTGAACATTCAGACCAATACCACCGG 66623 | || | ||| |||||| | | || || | ||||| || | || |||||||| | Sbjct 3100720 TACCTGCAATGTATGATCCTGTTCCGCGAATGTTGTGAATGTTTAATCCGATACCACCTG 3100779 Query 66624 CCGTCTTCGAGATGGCAGCACAATCGGCCACTGTCCGGAATATGCCGTCAATGGAGTCAC 66683 | |||| || || |||||| | ||| | || || |||||||| ||| Sbjct 3100780 CACTCTTGGAAATCATTGCACAAATTTTGAGTGTATCATAAATACCATCAATGGAATCAT 3100839 Query 66684 CCTTGATGGTCAGGAGGTAGCATGAACTAAGTTGGGGTTTGGGTGTGGCGGCCGAGAAGA 66743 | || |||| | | | ||||||| | ||| ||| | || || | || ||| | Sbjct 3100840 CTTTCATGGAAACCAAGAAGCATGAGGACATTTGTGGTCTTGGAGTACCAGCATTGAAAA 3100899 Query 66744 GGGTGGGTGTAGCGTGCGTAAAGTAATGGCGAGACATGTAATTGTACGTCTCGATGACAG 66803 |||| |||| || || |||||||| | | || ||||| || || || ||| Sbjct 3100900 GGGTTGGTGATGCATGTGTAAAGTACTTTTCACTCAAAAGGTTGTATGTTTCAATTGCAG 3100959 Query 66804 CATCAATGTTTTCGCCATGAATCCCGAGTGCACATCGCATCAGGAGGTATTGAGGCCGTT 66863 |||||| | ||| || ||||| || | ||| ||||||| | | ||| || | || Sbjct 3100960 CATCAACATCTTCTCCGTGAATACCAACGGCAACACGCATCAACATATGTTGTGGTCTTT 3101019 Query 66864 CGACCAGCCGATCC-TTGATATGCATTAAGTAGGAGCGTTCCAGGGTCTTGATACCAAAG 66922 | | || | ||| |||||| ||| | ||| || ||||| |||||||||| ||||||| Sbjct 3101020 C-AGCAACTTTTCCATTGATACGCAAAAGGTATGATCGTTCTAGGGTCTTGAAACCAAAG 3101078 Score = 233 bits (258), Expect = 2e-56 Identities = 585/871 (67%), Gaps = 22/871 (3%) Strand=Plus/Plus Query 61087 ATTTGGCGCATGTACAAAAAGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGTCGATTTG 61146 ||||||| ||||||||||| || |||||||| |||||||| | || ||| | |||||| Sbjct 1007201 ATTTGGCAAATGTACAAAAAAGCAGAAGCTTCTTTCTGGACCGCAGAAGAGATTGATTTG 1007260 Query 61147 TCCAAAGACATGAATGACTGGGAGC----GTTTATCGAGCGGTGAACAACATTTCATTAA 61202 |||||||| || | || ||||| ||| | ||| | |||| |||||||| Sbjct 1007261 TCCAAAGATTTGCACGATTGGGACAACAAGTTGAACGA-CAACGAACGTCATTTCATCTC 1007319 Query 61203 ACATGTGTTGGCGTTCTTTGCCGCTTCGGACGGTATCGTCAATGAGAATTTATTGGAACG 61262 || || ||||| |||||||||||||| || |||||||||||||| || || | ||||| Sbjct 1007320 TCACGTTTTGGCATTCTTTGCCGCTTCTGATGGTATCGTCAATGAAAACTTGGTCGAACG 1007379 Query 61263 TTTC-GCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCA 61321 ||| ||| | || || |||| | || || | || ||||| || ||||| || | Sbjct 1007380 ATTCAGCGGA-GAAGTTCAAGCAGCAGAAGCAAGATGCTTCTATGGTTTCCAAATCATGA 1007438 Query 61322 TGGAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGGAGCGGG 61381 |||| || | ||||| || | ||| | | | || ||||| |||||| | || | | Sbjct 1007439 TGGAAAACATTCACTCAGAAACTTACTCTTTGTTGATTGATACATACATCCGTGACCCTG 1007498 Query 61382 CGGAACGTGAACGATTGTTCAATGCCATCGAGACGATACCGGCGGTGAAGCGGAAAGCGG 61441 |||| || |||||| |||| || || || || || | || || || || | Sbjct 1007499 ATCAACGCGAGTTCTTGTTCGATGCTATTGAAACAATTCCAGTCGTCAAAACAAAGGCAG 1007558 Query 61442 ATTGGGCCTTCAATTGGATCACCAGTACAA--CGGCTACATTTGGTGAACGATTGCTGGC 61499 ||||||| | || ||||| | |||| ||| ||||||| |||||| ||| | || Sbjct 1007559 ATTGGGCACTAAAGTGGATTTC--TGACAAGCGGGCCACATTTGCTGAACGTTTGGTCGC 1007616 Query 61500 ATTTGCGGTGGTCGAGGGTGTATTTTTCAGTGGATCGTTTGCCGCAATCTTTTGGTTGAA 61559 ||||| | || || ||| | || |||||||| || || || ||||| ||| | || Sbjct 1007617 TTTTGCTGCCGTTGAAGGTATCTTCTTCAGTGGTTCATTCGCAAGTATCTTCTGGCTCAA 1007676 Query 61560 GAAACGTGGACTTATGCCCGGTCTGACCTTCAGCAATGAGTTGAT-ATCACGCGACGAGG 61618 ||| |||||| | ||||||||| |||| ||| |||||| ||||| | || | || || | Sbjct 1007677 GAAGCGTGGATTGATGCCCGGTTTGACATTCTCCAATGAATTGATCAGCA-GAGATGAAG 1007735 Query 61619 GCATGCATTGTGATTTTGCTGTTTTGCTATTCAAACGCTATCTGGTGAATCGTCCGTCGG 61678 | | || |||||| || |||| | |||| || || || || || | Sbjct 1007736 GTTTACACACTGATTTCGCATGTTTGTTGTTCA---GCCATTTGCGTAAGCGCGCTCATC 1007792 Query 61679 AGGAGCGTGTGGGTGAGATTGTTCGTGAGGCGGTAACTATCGAACAGGAATTTC-TGACT 61737 || ||| ||||| | || || || | |||||||| | |||| | ||| Sbjct 1007793 CTGATACAGTGAACAAGATTATCACAGAAGCTGTCTCAATCGAACA-AAGTTTCTTAACT 1007851 Query 61738 GACGCTTTGCCCGTCTCACTCATCGGCATGAATTGTGGACTAATGTCGCAGTATATTGAA 61797 || ||||| || | | ||||| ||||| | | | |||| || || |||||| Sbjct 1007852 GATGCTTTACCATGCAACTTAATCGGAATGAACTCCAAATTGATGTGTCAATACATTGAA 1007911 Query 61798 TTTGTTGCCGACCGTCTGTTGGTCGATTTGGGT-ATGAAGCGGATCTATAATACGAAAAA 61856 || ||| || ||||| ||||| | ||||||| | ||| || || ||| | | || Sbjct 1007912 TTCTGTGCTGATCGTCTATTGGTGGCTTTGGGTAACGAAAAGG-CATACAATGCAACCAA 1007970 Query 61857 CCCATTTGATTTCATGGACATGATTTCGCTGGATGGCAAGACGAATTTTTTCGAGAAACG 61916 |||||| |||| ||||| | || || | || ||||| || || || |||||| Sbjct 1007971 CCCATTCGATTGGATGGAGAACATCTCTTTAACCGGAAAGACTAACTTCTTTGAGAAAAA 1008030 Query 61917 TGTAGGCGACTA-TCAACGTTTGGGTGTAGC 61946 || | ||| || |||| | |||| ||||| Sbjct 1008031 GGTTGCCGAATACTCAAAG-ATGGGCGTAGC 1008060 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397567718969120