Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Melampsora_20abietis- canadensis_20[genbank_20GCA_5F002157025.1_202017-05-22] 14,223 sequences; 74,050,440 total letters Query= AAMG01002244.1 Length=504 Score E Sequences producing significant alignments: (Bits) Value seq6522 425 2e-116 seq6993 190 6e-46 seq5994 156 1e-35 >seq6522 Length=1561 Score = 425 bits (470), Expect = 2e-116 Identities = 362/440 (82%), Gaps = 10/440 (2%) Strand=Plus/Minus Query 47 TATTGTCACTACCTCCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGG 106 |||||||||||||| ||| |||| ||||||||||||||||||||||||||| ||||| | Sbjct 437 TATTGTCACTACCTGCCCATGTCAGGATTGGGTAATTTGCGCGCCTGCTGCAATCCTTAG 378 Query 107 ATGTGGTAGCCGTTTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCG 166 || || |||||||||||| | | ||| | ||||| ||| ||| ||||||||||||||| Sbjct 377 ATTTGAGGGCCGTTTCTCAGACCCTCTCACTGGAATTGAAACCTCATTCCCCGTTACCCG 318 Query 167 TTGAT-ACCATGGTAGGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAAT 225 | ||| |||| |||||||| ||||||||||||| |||||| ||||| ||| |||||||| Sbjct 317 T-GATCACCAAGGTAGGCCTCTATCCTACCATCACAAGTTGGTAGGGAAGATATTTGAAT 259 Query 226 GAACCATCGCCGGCTCAAGGCCATGCGATTCGTTAAGTTATTATGAATCACCAAGGAGCC 285 ||| ||| | | || ||||||| | | ||| || ||||||||||| |||| | | Sbjct 258 GAAGCATTGTCAGCACAAGGCCCTACAATTTAAAAACTTATTATGAATTGCCAACTGGAC 199 Query 286 CCGAAGGGCGTTGGTTTTTTATCTAATAAATACACCCCT-TC-----CGAAGTCGGGGTT 339 | | ||| | |||| |||||||||||| ||| ||| ||| || ||| || | Sbjct 198 CAGGAGGCCATTGG-TTTTTATCTAATGAATGCACACCTATCAATAAAGAAAGGGGCTGT 140 Query 340 TTTAGCATGTATTAGCTCTAGAATTACCACGGTTATCCATGTAGTAAGGTACTATCAAAT 399 || |||||||||||||||||||||||||| || ||||||||||||||||| ||||||| Sbjct 139 CTTGGCATGTATTAGCTCTAGAATTACCACAGTCATCCATGTAGTAAGGTATCATCAAAT 80 Query 400 AAACGATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGATTGCTTATACTTAG 459 ||| ||||||||||||||||| |||||||||||||||||||||| |||| |||||||| | Sbjct 79 AAATGATAACTGATTTAATGATCCATTCGCAGTTTCACTGTATA-ATTGTTTATACTTGG 21 Query 460 ACATGCATGGCTTAATCTTT 479 |||||||||||||||||||| Sbjct 20 ACATGCATGGCTTAATCTTT 1 >seq6993 Length=4352 Score = 190 bits (210), Expect = 6e-46 Identities = 124/135 (92%), Gaps = 1/135 (1%) Strand=Plus/Plus Query 370 GGTTATCCATGTAGTAAGGTACTATCAAATAAACGATAACTGATTTAATGAGCCATTCGC 429 ||||||||||||||| ||||| ||||||||||| ||||||||||||||||||||||| | Sbjct 3972 GGTTATCCATGTAGTGAGGTATCATCAAATAAACTATAACTGATTTAATGAGCCATTCAC 4031 Query 430 AGTTTCACTGTATAGATTGCTTATACTTAGACATGCATGGCTTAATCTTTGAGACAAGCA 489 ||||||||| |||| |||| | |||||| ||| ||||||||||||||||||||||||||| Sbjct 4032 AGTTTCACTTTATA-ATTGTTAATACTTGGACGTGCATGGCTTAATCTTTGAGACAAGCA 4090 Query 490 TATGACTACTGGCAG 504 ||||||||||||||| Sbjct 4091 TATGACTACTGGCAG 4105 >seq5994 Length=949 Score = 156 bits (172), Expect = 1e-35 Identities = 100/108 (93%), Gaps = 1/108 (1%) Strand=Plus/Plus Query 341 TTAGCATGTATTAGCTCTAGAATTACCACGGTTATCCATGTAGTAAGGTACTATCAAATA 400 || |||||||||||||||||||||||||| |||||||||||||||||||| |||||||| Sbjct 445 TTGGCATGTATTAGCTCTAGAATTACCACAGTTATCCATGTAGTAAGGTATGATCAAATA 504 Query 401 AACGATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGATTG 448 ||| ||||||||||| ||||||||||| ||||||||||||||| |||| Sbjct 505 AACTATAACTGATTTGATGAGCCATTCACAGTTTCACTGTATA-ATTG 551 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1510185175808