Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Melampsora_20abietis- canadensis_20[genbank_20GCA_5F002157025.1_202017-05-22] 14,223 sequences; 74,050,440 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq11248 89.7 4e-13 seq12155 84.2 2e-11 >seq11248 Length=18918 Score = 89.7 bits (98), Expect = 4e-13 Identities = 150/214 (70%), Gaps = 5/214 (2%) Strand=Plus/Plus Query 61108 GCGGAAGCTTCCTTCTGGACGGTGGAGGAGGTCGATTTGTCCAAAGACATGAATGACTGG 61167 || || ||||| || ||||| | || || ||||| | || || || ||| | || ||| Sbjct 4374 GCCGAGGCTTCATTTTGGACAGCCGAAGAAATCGATCTTTCGAAGGATATGCACGATTGG 4433 Query 61168 GAGCGTTTATCGAGCGGTGAACA---ACATTTCATTAAACATGTGTTGGCGTTCTTTGCC 61224 ||| || || | ||| | ||| || || |||||||| | || |||||||| Sbjct 4434 GAGAACAGATTGAATGATGATGAGAAACACTTTATCAAACATGTCCTAGCTTTCTTTGCT 4493 Query 61225 GCTTCGGACGGTATCGTCAATGAGAATTTATTGGAACGTTTC-GCGCAGGAGGTGCAAGT 61283 |||||||| || || ||||| || || || | ||| | ||| | | || |||| |||| Sbjct 4494 GCTTCGGATGGAATTGTCAACGAAAACTTGATTGAAAGATTCAGTGGAG-AGGTTCAAGC 4552 Query 61284 GTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATT 61317 | | || || || || ||||| |||||||||||| Sbjct 4553 GGCTGAAGCTCGATGCTTCTATGGCTTCCAGATT 4586 >seq12155 Length=30793 Score = 84.2 bits (92), Expect = 2e-11 Identities = 99/134 (74%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 66512 ACATTGTTGAAGACACGCAACATCGGTACGAGCCCGTTAGATTTGCCATTGGTGCCGTCG 66571 ||||||||||||||||||||||| || |||| ||| || || | || ||||| || | Sbjct 29320 ACATTGTTGAAGACACGCAACATGGGAACGATCCCATTTGAGTACCCGTTGGTACCAGCA 29379 Query 66572 ATGGGGGATCCTCGTGCCCGTATATCGTGAACATTCAGACCAATACCACCGGCCGTCTTC 66631 ||| || ||||| ||||| |||| ||| ||||| || ||||| || ||||| Sbjct 29380 ATGTAACTACCAGTGGCCCGGATATCATGAATATTGAGACCGATTCCACCAGCTGTCTTG 29439 Query 66632 GAGATGGCAGCACA 66645 ||||| |||||| Sbjct 29440 GAGATCATAGCACA 29453 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397499084444720