Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Melampsora_20aecidioides_20[genbank_20GCA_5F002157015.1_202017-05- 22] 29,225 sequences; 62,222,430 total letters Query= AAMG01001178.1 Length=367 Score E Sequences producing significant alignments: (Bits) Value seq18755 223 7e-56 >seq18755 Length=6561 Score = 223 bits (246), Expect = 7e-56 Identities = 261/347 (75%), Gaps = 18/347 (5%) Strand=Plus/Plus Query 1 CTTTACAATCCGAAGACCTTCTTTCACACACGCGGCATTGGCTGGATCAGGCTTTCGCCC 60 |||||||| |||||| ||||||| | | |||||||| ||| || | |||| |||||| || Sbjct 864 CTTTACAACCCGAAGGCCTTCTT-CGCTCACGCGGCGTTG-CTCGGTCAGACTTTCGTCC 921 Query 61 ATTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAG 120 |||| | || |||||| ||||||||||||||||||||||||| |||||||||||| |||| Sbjct 922 ATTGCCGAAGATTCCCTACTGCTGCCTCCCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAG 981 Query 121 TGTGACTGATCATCCTCTCAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCTCA 180 |||| | | ||| |||||||| | | |||| |||||||||||||| ||| ||||| || Sbjct 982 TGTGGCCGGTCACCCTCTCAGGTCGGCTACGCATCGTCGCCTTGGTAGGCCGTTACCCCA 1041 Query 181 CCAACTAGCTAATCCGACCTAGGCTCATCTGATAGCGCAAGGCCCGAAG-----GTCCCC 235 ||||||||||||| || | ||||| |||| || || ||| || |||| Sbjct 1042 CCAACTAGCTAATGCGCCGCGGGCTCCTCTGTCAG---TAGTGCCGTAGCACCTTTCCCA 1098 Query 236 T------GCTTTCTCCCGTAGGACGTATGCGGTATTAGCGTCCGTTTCCGAACGTTATCC 289 | | | | || || | | ||| || |||||| |||||||| |||||| | Sbjct 1099 TAAAGGGGATGCCCCCTCTATG-CCTATCTGGCATTAGCACCCGTTTCCAGGCGTTATTC 1157 Query 290 CCCACTACCAGGCAGATT-CCTAGGCATTACTCACCCGTCCGCCGCT 335 | || |||||||||| || | | |||||||||||||||||||| Sbjct 1158 CAGTCTGACAGGCAGATTGCCCACGTGTTACTCACCCGTCCGCCGCT 1204 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1071686708000