Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Melampsora_20aecidioides_20[genbank_20GCA_5F002157015.1_202017-05- 22] 29,225 sequences; 62,222,430 total letters Query= AAMG01002193.1 Length=560 Score E Sequences producing significant alignments: (Bits) Value seq18755 244 4e-62 >seq18755 Length=6561 Score = 244 bits (270), Expect = 4e-62 Identities = 335/455 (74%), Gaps = 21/455 (5%) Strand=Plus/Minus Query 35 GACCCGAAACCAAGTGATCTACCCATGGCCAGGATGAAGGTGCGG-TAACACGCCCTGGA 93 ||||||||||| ||||||||||| |||||||| ||||| ||||| |||||| | |||| Sbjct 5544 GACCCGAAACCGGGTGATCTACCCCTGGCCAGGGTGAAG-TGCGGGTAACACCGCATGGA 5486 Query 94 GGTCCGAACCCACTAATGTTGAAAAATTAGGGGATGAGCTGTGGGTAGGGGTGAAAGGCT 153 || |||||||||| |||||||| |||||||||||| ||||||||| |||| | Sbjct 5485 GGCCCGAACCCACCGGCGTTGAAAAGCCGGGGGATGAGCTGGGGGTAGGGGAGAAATTCC 5426 Query 154 AAACAAACTTGGAAATAGCTGGTTCTCTCCGAAAACTATTTAGGTAGTGCCTCAA-GTAT 212 || | |||| ||| ||||||||||||| |||||| |||||| || |||| ||| Sbjct 5425 AATCGAACTCGGAGATAGCTGGTTCTCCCCGAAATAGCTTTAGGGCTAGCGTCAAGGTAA 5366 Query 213 CACCATCGGGGGTAGAGCACTGTTATGGCTAGGGGGTCATTGCGAC-----TTACCAAAC 267 | | ||| |||||||||||| | ||| | |||| | |||| ||||||| | Sbjct 5365 GAGAAGCGGAGGTAGAGCACTGAT-TGGGTGCGGGGCC----CGACCAGGGTTACCAAGC 5311 Query 268 -CATTGCAAACTCCGAATG-CGCATCAGTTTTACCGCGGGAGTGAGGGCATGGGTGCTAA 325 || | ||||||||||||| ||| | | | || || ||| || | | ||||||| Sbjct 5310 TCAGT-CAAACTCCGAATGCCGCTTTA--TCATCCTTGGCAGTCAGACTACGAGTGCTAA 5254 Query 326 GGTCCGTGCCCGAGAGGAGAAGAATCCGGACTATCAGCTAAGGCCCCGAAATGACAGCTA 385 | |||||| | | ||| || | || ||| | ||||||||| ||| || | ||| | Sbjct 5253 GATCCGTGGTCAAAAGGGAAACAGCCCAGACCAACAGCTAAGGTCCCAAAGTACCAGTTC 5194 Query 386 AGTTAAACTAACGAAGTCTGATTGCTAAGACAGCTAGGATGTTGGCTTGGAAGCAGCCAT 445 ||| | ||||| || ||| ||||| | ||||||||||||| |||||||||| Sbjct 5193 AGTGGGA--AACGATGTGGCGGTGCACAGACAACCAGGATGTTGGCTTAGAAGCAGCCA- 5137 Query 446 TCATTTAAAGAGTGCGTAACAGCTCACTAGTCGAG 480 |||||||||||||||||| |||||||| |||||| Sbjct 5136 CCATTTAAAGAGTGCGTAATAGCTCACTGGTCGAG 5102 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1689106214400