Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Melampsora_20occidentalis_20[genbank_20GCA_5F002157085.1_202017-05- 22] 21,759 sequences; 97,689,000 total letters Query= AAMG01002186.1 Length=328 Score E Sequences producing significant alignments: (Bits) Value seq21173 125 1e-26 seq17904 86.0 1e-14 seq17087 73.4 7e-11 >seq21173 Length=8966 Score = 125 bits (138), Expect = 1e-26 Identities = 86/97 (89%), Gaps = 0/97 (0%) Strand=Plus/Plus Query 232 TGCTGGGGATAGAGCATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTG 291 || |||||||||||||||||||| ||| ||||||||| |||||| ||||||||| | || Sbjct 7473 TGATGGGGATAGAGCATTGCAATAATTTCTCTTCAACAAGGAATACCTAGTAAGTGTATG 7532 Query 292 TCATCAGCACGCGTTGATTACGTCCCTGCCCTTTGTA 328 ||| ||||| | ||||||||||||||||||||||||| Sbjct 7533 TCACCAGCAGGTGTTGATTACGTCCCTGCCCTTTGTA 7569 >seq17904 Length=6056 Score = 86.0 bits (94), Expect = 1e-14 Identities = 52/55 (95%), Gaps = 0/55 (0%) Strand=Plus/Minus Query 221 AAACTCTGTCGTGCTGGGGATAGAGCATTGCAATTATTGCTCTTCAACGAGGAAT 275 ||||| |||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 2101 AAACTTGGTCGTGATGGGGATAGAGCATTGCAATTATTGCTCTTCAACGAGGAAT 2047 >seq17087 Length=3566 Score = 73.4 bits (80), Expect = 7e-11 Identities = 63/78 (81%), Gaps = 0/78 (0%) Strand=Plus/Plus Query 207 TGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTGCAATTATTGCTCTTCA 266 ||| ||||||||| ||||| | | ||||||||||||||||||||||||||| || Sbjct 348 TGGATAATCTTGTGAAACTTGGCCACAACAGGGATAGAGCATTGCAATTATTGCTCTGCA 407 Query 267 ACGAGGAATGCCTAGTAA 284 | |||||| |||||||| Sbjct 408 ATAAGGAATACCTAGTAA 425 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 946993898752