Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microbotryum_20intermedium_20[genbank_20GCA_5F900096595.1_202017-07- 16] 24 sequences; 23,461,035 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq2 250 2e-61 seq6 89.7 4e-13 >seq2 Length=936589 Score = 250 bits (276), Expect = 2e-61 Identities = 761/1157 (66%), Gaps = 48/1157 (4%) Strand=Plus/Minus Query 65783 TCGTACGGCATACCCATCAGGACA--AAAGTGTCGGCCAGACCTTGAACTCCAATACCGA 65840 ||| ||||||| ||| ||| || || | |||||||| ||||| ||||| || |||| Sbjct 4459 TCGAACGGCATCGCCA--AGGCCATGAACGCGTCGGCCAACCCTTGCACTCCGATGCCGA 4402 Query 65841 TGGGACGATGACGCAAATTGGAACGTCTCGCCTCAGGTACAGGGTAGTAATTGATATCGA 65900 ||||||| || || || ||||| | |||||| || |||||||| |||| |||| Sbjct 4401 TGGGACGGTGGCGGAAGTTGGAGTTTTGCGCCTCGATGACGGGGTAGTAGTTGACGTCGA 4342 Query 65901 TAATGCGATTCAAATTGCGTGTCACCACATGCACGATA-CGTCGCAATTGTTCGAAATCA 65959 | ||||| ||||| ||| | || || | ||| ||| ||| | | ||| ||| Sbjct 4341 TGATGCGGTTCAAGTTGAACGCGACGACCTTGGCGACCTCGT-GCAGCTTCTTGAAGTCA 4283 Query 65960 AAATGTTTAGGACGATCGGGAGTGCCGGACACCACAAACTTGGGAAGGGCAAGAGATGCG 66019 | | | || || || || || || || || | | | || || Sbjct 4282 TAC-----ACGCCGTTCTTGA-TG-----------AAGCTCGGCAACG-CGATCGAGGCC 4241 Query 66020 AGGTTGCAGACAGCTATCTCGTCAGGAGCGGTATACTCGACAATTTCGGTGCACAGATTA 66079 | |||||| || || |||||| || || | ||||||| || |||||||||| || Sbjct 4240 AAGTTGCAAACGGCGCACTCGTCGGGGGCCGAGTACTCGATGATCTCGGTGCACAAGTTG 4181 Query 66080 CTGCAGCGTATGGTGCCCAAATTCTGTTGATT--ACT-CTTGCGATTGCATGCATCCTTG 66136 | |||||||| | ||||| || || ||| |||| | || || |||||| Sbjct 4180 GACGACTTGATGGTGCCGAGATTCTTCTGGTTCGACTTCTTGT--TCGCG-GCGTCCTTG 4124 Query 66137 TACATCATGTACGGAGTGCCGGTCTCAACTTGGGACTCAATGATGGCGTGCCAAAGA--- 66193 || | |||| | || | |||||||| || |||| ||| | ||| |||| |||||| Sbjct 4123 TAGAGCATGAAGGGGTTACCGGTCTCGACCTGGGCCTCGAGGATCGCGTACCAAAGCTTT 4064 Query 66194 -GCGCGTGCCT--TCACCGTACGTACCGCCCTACCTTTGCGTTCGTAATGTTCGTAGAGG 66250 ||||| | | || | | | | ||||| |||| ||||| | ||| | | | Sbjct 4063 TGCGCGGGGATCGTCTTCTTGGCT-CGGCCCT-CCTTC----TCGTACTTTTCAAACAAG 4010 Query 66251 TGTTCGAAGGATTCACCCCATACTTCGGACAGACATGGACACTTGTGTGGACACATCAGC 66310 ||| || || | || ||| |||| || || | || || | ||| Sbjct 4009 ACGCGGAACTCCTCGCCATAGACCTCGTGGAGACCCGGTGCCTCGGCGGGGCAGAACAGG 3950 Query 66311 GACCAATCACCATCCTGTTCTACACGACGCATAAATAGATCAGGTATCCAGAGGGCGTAG 66370 | ||| ||||| | || ||||| ||| || ||||| || |||||||| ||| || Sbjct 3949 GGCCAGTCACCGGCGGCCTCGACACGCTCCATGAAGAGATCGGGGATCCAGAGCGCGAAG 3890 Query 66371 AAGAGATCGCGTGCTCGTTGCTCCTCAATGCCGTGATTTTTGCGCAAGTCGAGGAACTCA 66430 ||||||||||| || || ||||| ||||||| || ||||| | ||||||||||||| Sbjct 3889 AAGAGATCGCGAGCGCGGACTTCCTCCTTGCCGTGGTTCTTGCGAAGGTCGAGGAACTCA 3830 Query 66431 AAGATGTCGGCATGCCATGGTTCCAGGTAGATGGCGAACGAGCCCATACGTTTGCCGCCA 66490 |||| |||||| ||||| || || ||||||||||| || | || || ||| |||| Sbjct 3829 AAGACGTCGGCGTGCCACGGCTCGAGGTAGATGGCAAAAGCCCCGGGGCGCTTGTTGCCA 3770 Query 66491 CCTTGGTCGACGTAGCGAGCGACATTGTTGAAGACACGCAACATCGGTACGAGCCCGTTA 66550 ||||||||||||||||| ||| |||||| |||| || | ||| || |||| ||||| Sbjct 3769 CCTTGGTCGACGTAGCGTGCGGTGTTGTTGTAGACGCGGAGCATGGGGACGATGCCGTTC 3710 Query 66551 GATTTGCCATTGGTGCCGTCGATGGGGGATCCTCGTGCCCGTATATCGTGAACATTCAGA 66610 || | ||| || || ||| ||||| || || || || || | ||| | ||| Sbjct 3709 GAGTAGCCGTTCGTCCCGGCGATGTACGAGCCGGTCGCGCGGATGTTGTGGATGCTCAAG 3650 Query 66611 CCAATACCACCGGCCGTCTTCGAGATGGCAGCACAATCGGC--CACTGTCCGGAATATGC 66668 || || |||||||| ||||| |||||| ||| | || | | || | | |||| Sbjct 3649 CCGATGCCACCGGCGGTCTTGGAGATG--AGCGCGCACGTCTTGAGCGTATCGTAGATGC 3592 Query 66669 CGTCAATGGAGTCACCCTTGATGGTCAGGAGGTAGCATGAACTAAGTTGGGGTTTGGGTG 66728 | || || ||||| |||| || || | | | |||| || || || || | ||| | Sbjct 3591 CTTCGATCGAGTCGTCCTTCATCGTGACCAAGAAGCACGACGAGAGCTGCGGGTGGGGCG 3532 Query 66729 TGGCGGCCGAGAAGAGGGTGGGTGTAGCGTGCGTAAAGTAATGGCGAGACATGTAATTGT 66788 | |||| |||||| || || | ||||| || ||||| | |||||| |||| Sbjct 3531 TACCGGCGTTGAAGAGCGTCGGCGAGGCGTGGGTGAAGTAGCGCTCGGACATGAGGTTGT 3472 Query 66789 ACGTCTCGATGACAGCATCAATGTTTTCGCCATGAATCCCGAGTGC-ACATCGCATCAGG 66847 ||| || | ||| || |||| | | || || |||| || ||| ||||| || Sbjct 3471 ACGACTGCAGGACGCGCTCGATGTCATGACTGTGGATGCCGACGGCGACA-CGCATGAGC 3413 Query 66848 AGGTATTGAGGCCGTTCGACCAGCCGATCCTTGATATGCATTAAGTAGGAGCGTTCCAGG 66907 | || ||| || |||||| | | | | | ||| | | ||||||||||| || || Sbjct 3412 ATGTGTTGCGGGCGTTCGGCAACCTTGCCGTCGATGCGAAGCAAGTAGGAGCGCTCAAGC 3353 Query 66908 GTCTTGATACCAAAGTA 66924 ||||||| |||||||| Sbjct 3352 GTCTTGAAGCCAAAGTA 3336 >seq6 Length=2534666 Score = 89.7 bits (98), Expect = 4e-13 Identities = 161/234 (69%), Gaps = 5/234 (2%) Strand=Plus/Minus Query 61087 ATTTGGCGCATGTACAAAAAGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGTCGATTTG 61146 || ||| |||||||||| | || |||| ||||||||| ||| || ||| |||| | Sbjct 1722380 ATCTGGGCCATGTACAAACAAGCACAAGCGTCCTTCTGGTCGGCCGAAGAGATCGACCTC 1722321 Query 61147 TCCAAAGACATGAATGACTGGGAGC----GTTTATCGAGCGGTGAACAACATTTCATTAA 61202 ||| ||| || | |||||| | | | | | | | || ||||| | ||| | Sbjct 1722320 GGCAACGACCTGCACGACTGGCACCACAAGCTCAACAA-CGATGAACGCTACTTCGTCGC 1722262 Query 61203 ACATGTGTTGGCGTTCTTTGCCGCTTCGGACGGTATCGTCAATGAGAATTTATTGGAACG 61262 || ||| | || ||||| ||||| ||||| || | || ||||||||||| | ||| | Sbjct 1722261 CCACGTGCTCGCCTTCTTCGCCGCCTCGGATGGGGTTGTGAATGAGAATTTGGTCGAAAG 1722202 Query 61263 TTTCGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGAT 61316 ||| || |||||||| | |||||||| | || || |||||||| || || Sbjct 1722201 GTTCTCGAGTGAGGTGCAGTTCGCGGAGGCGAGGTGCTTTTACGGCTTTCAAAT 1722148 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397567883711360